Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 1.1e-201 706.4 359 100.0
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 1.0e-106 391.0 341 62.8
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 1.4e-79 300.8 331 48.3
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 1.2e-78 297.7 331 47.7
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 2.6e-78 296.6 338 46.4
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 4.4e-78 295.8 329 47.1
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 9.9e-78 294.7 330 47.0
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.7e-77 293.9 329 47.1
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 2.9e-77 293.1 334 47.3
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.2e-75 287.7 332 47.3
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.2e-75 287.7 332 47.3
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 1.6e-75 287.3 335 46.3
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 2.7e-75 286.6 334 44.0
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 4.6e-75 285.8 330 46.4
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 3.0e-74 283.1 330 45.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.9e-74 282.7 331 43.8
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 3.9e-74 282.7 341 45.2
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 3.9e-74 282.7 335 45.7
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 5.1e-74 282.3 329 45.0
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 5.1e-74 282.3 332 45.5
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 6.6e-74 282.0 333 43.8
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 8.6e-74 281.6 329 47.1
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 3.3e-73 279.6 329 46.2
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 4.3e-73 279.3 334 44.3
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 1.2e-72 277.7 329 45.0
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 1.6e-72 277.3 329 45.3
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 2.1e-72 276.9 334 43.4
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 2.1e-72 276.9 322 44.4
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 2.1e-72 276.9 337 44.2
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 3.6e-72 276.2 327 45.3
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 6.2e-72 275.4 334 42.5
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 8.1e-72 275.0 330 44.8
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 8.1e-72 275.0 332 43.7
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 1.1e-71 274.6 323 45.5
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 1.4e-71 274.2 339 44.2
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 2.4e-71 273.5 327 43.7
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 3.1e-71 273.1 331 45.9
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 4.0e-71 272.7 329 45.3
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 6.8e-71 271.9 330 43.0
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 6.8e-71 271.9 332 43.4
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 8.9e-71 271.6 338 43.5
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 1.2e-70 271.2 326 44.2
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 1.5e-70 270.8 333 43.5
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 1.5e-70 270.8 332 43.1
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 2.0e-70 270.4 340 42.4
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 3.4e-70 269.6 340 43.2
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 4.4e-70 269.2 334 44.0
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 5.8e-70 268.9 332 43.4
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 5.8e-70 268.9 329 43.2
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 7.6e-70 268.5 330 44.2
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 7.6e-70 268.5 336 42.6
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 9.9e-70 268.1 329 43.5
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 9.9e-70 268.1 333 42.0
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 1.3e-69 267.7 333 42.6
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 1.7e-69 267.3 329 43.5
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 2.2e-69 266.9 336 43.2
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 3.8e-69 266.2 351 41.3
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 3.8e-69 266.2 329 44.4
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 3.8e-69 266.2 335 43.9
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 6.4e-69 265.4 338 42.9
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 1.9e-68 263.8 335 42.1
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 1.9e-68 263.8 336 43.8
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 1.9e-68 263.8 328 44.2
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 2.4e-68 263.5 333 40.8
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 2.4e-68 263.5 329 43.2
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 3.5e-67 259.6 334 41.9
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 3.5e-67 259.6 338 42.9
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 4.6e-67 259.2 319 43.3
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.0e-66 258.1 338 42.9
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.0e-66 258.1 338 42.9
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 1.7e-66 257.3 336 39.9
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 6.6e-66 255.4 336 42.9
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 8.7e-66 255.0 322 42.2
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 8.7e-66 255.0 338 42.9
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 1.5e-65 254.2 311 44.7
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.5e-65 254.2 324 42.6
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 5.6e-65 252.3 329 41.3
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 9.6e-65 251.5 303 44.9
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 2.8e-64 250.0 328 43.0
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 1.1e-63 248.1 337 40.7
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 1.4e-63 247.7 327 41.3
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 1.4e-63 247.7 327 41.3
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 3.1e-63 246.5 293 42.3
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.5e-62 244.2 290 43.1
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 9.9e-62 241.5 329 41.6
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 9.9e-62 241.5 329 41.6
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 2.9e-61 240.0 333 41.1
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 1.9e-60 237.3 328 41.8
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 3.2e-60 236.5 331 43.5
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 4.2e-60 236.1 297 41.8
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.3e-60 235.0 284 42.6
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 1.6e-59 234.2 328 41.2
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 7.8e-59 231.9 329 39.8
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 1.0e-58 231.5 360 39.7
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 6.6e-58 228.8 331 39.0
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 6.9e-55 218.8 347 36.9
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 2.2e-53 213.8 264 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 3.2e-52 209.9 324 38.9
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 1.3e-48 198.0 340 38.5
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 6.2e-48 195.7 380 33.4
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 1.4e-47 194.5 266 41.7
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 3.1e-47 193.4 383 32.9
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 1.0e-45 188.3 333 35.7
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 4.3e-41 172.9 215 47.4
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 1.4e-36 157.9 187 45.5
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 6.1e-35 152.5 323 31.6
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 1.7e-29 134.4 193 43.5
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.1e-28 131.7 167 43.7
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 2.1e-27 127.5 132 45.5
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.7e-27 127.1 133 48.9
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 1.8e-26 124.4 143 45.5
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 1.1e-23 115.2 108 50.9
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 1.5e-22 111.3 104 45.2
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 2.5e-20 104.0 122 45.9
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 2.6e-17 94.0 105 41.9
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 4.4e-17 93.2 90 48.9
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 4.5e-14 83.2 330 25.2
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 1.5e-12 78.2 87 48.3
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 3.0e-10 70.5 150 34.7
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 4.4e-09 66.6 118 38.1
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 4.8e-08 63.2 58 48.3
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 4.1e-07 60.1 67 44.8


User provided reference genes

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