Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 4.8e-196 687.6 329 100.0
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.2e-168 594.7 321 85.0
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 2.1e-167 592.4 324 85.2
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 2.7e-167 592.0 319 85.9
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 6.1e-167 590.9 326 83.7
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 8.0e-167 590.5 323 84.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.8e-166 589.3 327 83.8
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.0e-166 588.6 321 84.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.0e-165 585.9 322 83.2
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.3e-165 585.1 327 83.5
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 5.7e-165 584.3 327 82.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 5.7e-165 584.3 327 82.6
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 7.5e-165 583.9 319 83.4
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 9.7e-165 583.6 316 84.5
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.8e-164 582.0 325 84.0
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 4.8e-164 581.3 327 82.3
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 6.3e-164 580.9 317 83.3
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 8.2e-164 580.5 326 81.9
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.1e-163 580.1 325 83.7
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.1e-163 580.1 322 82.6
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-163 580.1 321 82.9
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.4e-163 578.9 324 83.0
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 3.1e-163 578.6 325 81.8
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.1e-163 578.6 328 82.3
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 3.1e-163 578.6 320 82.2
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 4.1e-163 578.2 322 82.0
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.1e-163 578.2 321 82.2
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 5.3e-163 577.8 323 82.7
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 7.0e-163 577.4 321 83.2
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 7.0e-163 577.4 319 81.2
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 7.0e-163 577.4 324 82.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 9.1e-163 577.0 319 82.8
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 9.1e-163 577.0 327 81.3
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.2e-162 576.6 313 84.3
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 1.6e-162 576.2 322 81.7
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 1.6e-162 576.2 321 82.2
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.6e-162 576.2 321 82.2
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.0e-162 575.9 308 85.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 2.0e-162 575.9 327 82.0
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.7e-162 575.5 319 83.1
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 2.7e-162 575.5 321 81.9
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 2.7e-162 575.5 318 83.0
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.7e-162 575.5 310 84.5
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 3.5e-162 575.1 328 82.0
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.5e-162 574.7 321 82.6
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 4.5e-162 574.7 326 81.3
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 4.5e-162 574.7 326 81.3
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 4.5e-162 574.7 317 82.6
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 4.5e-162 574.7 326 81.0
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 5.9e-162 574.3 322 82.9
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.2e-161 572.4 317 82.3
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.2e-161 572.4 314 82.5
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 2.2e-161 572.4 324 80.6
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 2.9e-161 572.0 326 81.3
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 2.9e-161 572.0 316 82.6
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 5.0e-161 571.2 326 81.9
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 6.5e-161 570.9 321 81.6
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 8.5e-161 570.5 312 84.6
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.1e-160 570.1 313 83.7
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.1e-160 570.1 324 80.2
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.5e-160 569.7 327 80.1
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.9e-160 569.3 322 81.1
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.5e-160 568.9 327 80.7
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 3.2e-160 568.5 323 81.7
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 5.5e-160 567.8 317 81.7
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 5.5e-160 567.8 308 83.8
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.6e-159 566.2 327 81.0
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.1e-159 565.8 324 81.2
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 3.6e-159 565.1 320 81.6
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 4.7e-159 564.7 312 82.4
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.1e-159 564.3 313 81.2
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.0e-158 563.5 331 79.8
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.4e-158 563.1 319 80.9
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 2.3e-158 562.4 324 79.3
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 2.3e-158 562.4 322 79.8
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 6.8e-158 560.8 323 79.9
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 6.8e-158 560.8 315 82.2
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.2e-157 560.1 317 82.3
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 1.2e-157 560.1 317 81.4
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 2.0e-157 559.3 328 79.0
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.0e-157 559.3 320 80.0
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 3.4e-157 558.5 313 82.4
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 5.7e-157 557.8 313 82.1
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 2.2e-156 555.8 317 79.5
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 4.8e-156 554.7 321 79.1
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.3e-156 554.3 312 81.4
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.3e-156 554.3 312 81.4
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.1e-155 553.5 313 80.5
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 2.4e-155 552.4 321 78.8
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 2.4e-155 552.4 321 78.8
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.6e-154 549.7 313 79.6
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.6e-154 549.7 322 77.6
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.6e-154 549.7 328 78.4
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 3.5e-154 548.5 381 69.6
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.0e-153 547.0 323 77.7
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.3e-153 546.6 321 77.9
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.3e-153 546.6 321 77.9
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.7e-153 546.2 304 82.9
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 2.9e-153 545.4 318 78.6
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 3.8e-153 545.0 328 78.7
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.1e-152 543.5 328 78.4
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 2.5e-152 542.3 313 79.6
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 2.2e-148 529.3 343 73.5
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 2.8e-148 528.9 304 80.9
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 1.4e-147 526.6 315 77.5
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 4.1e-147 525.0 313 76.4
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.9e-145 518.8 308 77.6
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.8e-142 507.7 309 77.7
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 2.6e-141 505.8 316 74.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.9e-140 502.3 295 76.3
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 5.4e-139 498.0 271 84.5
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.2e-138 496.9 277 81.2
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 2.1e-135 486.1 326 69.3
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 5.8e-133 478.0 272 80.9
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.0e-130 469.5 308 68.8
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.0e-129 467.2 312 67.6
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.0e-129 467.2 312 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.7e-129 466.5 305 69.8
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.0e-126 455.3 333 66.4
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 1.7e-121 439.9 251 79.3
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.5e-117 426.8 307 62.9
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.4e-110 403.7 231 81.8
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 3.8e-108 395.6 322 59.6
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.4e-101 372.5 246 70.3
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.7e-92 343.6 215 74.0
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 3.2e-91 339.3 319 51.4
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 6.9e-86 321.6 352 45.5
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.8e-71 273.1 360 39.4
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.0e-53 213.8 123 77.2
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 7.8e-29 132.1 89 70.8
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.0e-28 131.7 82 75.6
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 9.2e-22 108.6 83 67.5
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.1e-18 97.4 68 67.6
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 6.4e-15 85.9 45 88.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 3.5e-13 80.1 52 71.2
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 6.0e-13 79.3 41 87.8
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.5e-11 74.7 42 73.8
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.6e-08 63.9 45 62.2


User provided reference genes

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