Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.2e-198 696.4 371 100.0
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 6.8e-106 388.3 281 77.2
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 7.5e-97 358.2 308 54.9
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.2e-96 356.7 310 57.1
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 4.9e-96 355.5 309 56.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 6.4e-96 355.1 305 56.1
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 1.1e-95 354.4 310 56.1
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.1e-95 354.4 305 56.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.4e-95 354.0 311 55.9
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.2e-95 352.8 308 56.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 3.2e-95 352.8 308 54.9
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.4e-95 352.1 305 56.4
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.2e-94 350.9 308 54.5
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.2e-94 350.9 315 55.2
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.7e-94 349.7 305 53.8
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.5e-94 349.4 304 55.3
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.5e-94 349.4 305 54.4
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.6e-94 349.0 304 55.3
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.7e-93 347.1 310 54.5
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.0e-93 346.3 303 56.4
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 3.0e-93 346.3 307 56.0
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.0e-93 345.5 307 55.4
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 8.6e-93 344.7 305 53.4
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.9e-92 343.6 305 55.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 5.6e-92 342.0 309 53.7
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.6e-92 342.0 305 53.4
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 5.6e-92 342.0 305 53.8
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.5e-92 341.3 305 54.1
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 9.5e-92 341.3 307 53.4
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.8e-91 339.7 305 54.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.2e-91 338.6 305 55.4
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 6.2e-91 338.6 300 55.7
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.8e-90 337.0 317 52.1
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.8e-90 337.0 310 52.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.8e-90 337.0 316 53.5
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.3e-90 336.7 315 52.1
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.3e-90 336.7 309 52.8
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 5.2e-90 335.5 309 52.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 6.8e-90 335.1 305 51.5
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.8e-90 335.1 309 51.8
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 6.8e-90 335.1 308 52.3
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-89 334.3 306 54.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.2e-89 334.3 305 52.8
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.5e-89 334.0 309 53.1
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.5e-89 334.0 309 53.1
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.0e-89 333.6 305 52.8
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.6e-89 333.2 307 51.8
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.6e-89 333.2 307 51.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 3.4e-89 332.8 308 52.6
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.4e-89 332.8 309 53.7
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 3.4e-89 332.8 305 52.5
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.4e-89 332.8 314 51.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 7.5e-89 331.6 305 52.5
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.3e-88 330.9 305 51.8
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.3e-88 330.9 305 51.8
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.3e-88 330.9 304 53.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.7e-88 330.5 309 51.5
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 4.9e-88 328.9 311 50.5
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 4.9e-88 328.9 307 50.8
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 8.3e-88 328.2 309 53.7
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.4e-87 326.6 305 52.1
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 3.2e-87 326.2 309 53.4
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 3.2e-87 326.2 305 50.5
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 4.1e-87 325.9 305 53.1
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.1e-87 325.9 303 51.8
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 4.1e-87 325.9 305 50.8
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.4e-87 325.5 308 51.6
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 5.4e-87 325.5 348 49.4
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 5.4e-87 325.5 307 51.8
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 7.0e-87 325.1 308 52.3
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-86 324.3 303 51.8
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.0e-86 323.6 345 48.7
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.6e-86 322.4 305 52.8
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.6e-86 322.4 308 50.6
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-85 321.2 307 53.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.3e-85 320.9 307 52.1
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-85 320.5 316 51.9
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.9e-85 319.3 307 52.1
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 8.6e-85 318.2 307 52.1
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 8.6e-85 318.2 307 52.1
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.1e-84 317.8 308 51.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.5e-84 317.4 303 52.1
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-84 317.0 308 51.9
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.5e-84 316.6 307 51.8
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 3.3e-84 316.2 309 50.2
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 5.6e-84 315.5 307 51.8
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 7.3e-84 315.1 310 51.3
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 7.3e-84 315.1 312 50.3
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 9.5e-84 314.7 311 49.2
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.1e-83 313.5 320 50.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.1e-83 313.5 309 51.1
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.1e-83 313.5 307 51.1
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.8e-83 313.2 306 50.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.6e-83 312.8 307 50.5
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 4.7e-83 312.4 309 50.8
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.3e-82 310.1 326 48.5
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 3.1e-82 309.7 321 51.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.9e-82 308.1 303 48.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.0e-81 307.0 316 47.5
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 7.5e-81 305.1 299 51.8
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.4e-80 302.0 303 48.5
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.4e-80 302.0 303 48.5
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-79 300.8 303 49.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-78 297.0 307 49.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.1e-78 297.0 280 51.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 6.0e-78 295.4 341 46.0
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.0e-77 294.7 312 47.8
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.9e-76 290.4 311 47.6
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.3e-76 288.5 298 49.3
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-75 287.3 305 50.2
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.8e-75 286.6 298 49.0
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.7e-75 285.8 298 49.0
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 5.2e-74 282.3 357 42.6
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.2e-73 281.2 305 47.2
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 2.2e-72 276.9 272 49.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.3e-69 267.7 308 43.2
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.7e-69 267.3 316 44.3
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.5e-68 264.2 265 50.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.6e-67 260.8 317 44.2
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.2e-65 254.6 300 44.0
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.6e-65 253.4 284 47.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.5e-62 243.0 316 43.4
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 7.8e-62 241.9 313 42.2
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 2.5e-60 236.9 304 43.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 9.6e-60 235.0 259 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.6e-57 226.9 275 42.5
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.5e-57 226.1 196 56.1
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.9e-56 223.4 224 49.1
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 6.2e-51 205.7 158 58.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.4e-50 204.5 198 52.0
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.8e-50 204.1 266 43.2
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 4.5e-41 172.9 291 34.4
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 2.1e-30 137.5 186 37.1
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 7.4e-28 129.0 84 69.0
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.4e-26 124.8 114 53.5
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.3e-24 118.2 90 56.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 6.1e-22 109.4 73 67.1
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.8e-21 105.5 136 42.6
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.7e-19 100.1 68 67.6
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 8.2e-19 99.0 75 60.0
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.0e-16 92.0 175 32.0
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.0e-13 82.0 102 43.1
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 7.4e-12 75.9 113 40.7
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 9.7e-12 75.5 58 60.3
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.4e-10 71.6 98 40.8
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-10 71.2 105 41.0
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.8e-10 71.2 105 41.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.1e-10 70.5 84 46.4
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-09 67.4 51 58.8
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.0e-08 65.5 47 59.6
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-07 61.2 81 40.7
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.2e-07 59.3 100 34.0


User provided reference genes

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