Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 2.0e-85 318.9 149 100.0
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 2.6e-72 275.4 130 98.5
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 2.6e-48 195.7 129 70.5
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 9.9e-24 114.0 108 53.7
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 1.7e-23 113.2 113 50.4
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 8.4e-23 110.9 117 48.7
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 2.4e-22 109.4 127 44.1
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 4.2e-22 108.6 122 43.4
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 1.6e-21 106.7 122 45.1
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 3.0e-20 102.4 130 41.5
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 3.0e-20 102.4 105 51.4
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 3.9e-20 102.1 127 43.3
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 3.9e-20 102.1 132 45.5
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 5.1e-20 101.7 126 46.0
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 8.7e-20 100.9 103 49.5
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 1.5e-19 100.1 129 40.3
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.9e-19 99.8 129 46.5
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 5.6e-19 98.2 122 45.1
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 2.8e-18 95.9 139 43.9
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 8.1e-18 94.4 132 40.9
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 8.1e-18 94.4 132 40.9
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 8.1e-18 94.4 128 43.8
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 1.1e-17 94.0 104 49.0
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 1.1e-17 94.0 113 42.5
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.1e-17 94.0 117 44.4
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.4e-17 93.6 104 48.1
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 6.9e-17 91.3 117 42.7
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 9.0e-17 90.9 110 44.5
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 9.0e-17 90.9 119 43.7
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 9.0e-17 90.9 120 43.3
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 1.5e-16 90.1 116 46.6
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.5e-16 90.1 117 43.6
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 2.0e-16 89.7 105 47.6
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 2.0e-16 89.7 110 43.6
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 2.0e-16 89.7 105 48.6
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 2.6e-16 89.4 116 43.1
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 2.6e-16 89.4 122 37.7
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 2.6e-16 89.4 122 38.5
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 2.6e-16 89.4 114 43.0
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 2.6e-16 89.4 105 48.6
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 4.5e-16 88.6 105 47.6
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 5.8e-16 88.2 97 47.4
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 7.6e-16 87.8 128 40.6
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 9.9e-16 87.4 105 48.6
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 3.8e-15 85.5 99 45.5
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 4.9e-15 85.1 120 39.2
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 6.4e-15 84.7 97 44.3
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 6.4e-15 84.7 115 39.1
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 8.4e-15 84.3 125 39.2
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.1e-14 84.0 103 45.6
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.1e-14 84.0 91 48.4
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 1.9e-14 83.2 125 41.6
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 2.4e-14 82.8 103 47.6
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.4e-14 82.8 97 46.4
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 2.4e-14 82.8 104 44.2
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 4.2e-14 82.0 97 46.4
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 4.2e-14 82.0 96 44.8
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 4.2e-14 82.0 81 55.6
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 5.4e-14 81.6 95 48.4
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 7.1e-14 81.3 123 37.4
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 7.1e-14 81.3 123 37.4
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 9.3e-14 80.9 123 37.4
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 1.2e-13 80.5 118 40.7
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.6e-13 80.1 81 53.1
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 2.1e-13 79.7 80 50.0
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.1e-13 79.7 125 39.2
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.7e-13 79.3 103 42.7
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 3.5e-13 79.0 103 44.7
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 4.6e-13 78.6 122 35.2
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 7.9e-13 77.8 120 40.0
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 1.0e-12 77.4 103 41.7
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 1.3e-12 77.0 95 46.3
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 1.8e-12 76.6 60 56.7
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.8e-12 76.6 103 41.7
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.8e-12 76.6 96 41.7
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 2.3e-12 76.3 105 35.2
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.3e-12 76.3 67 55.2
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 2.3e-12 76.3 94 41.5
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 2.3e-12 76.3 127 37.0
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 8.7e-12 74.3 87 47.1
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 1.9e-11 73.2 98 43.9
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 2.5e-11 72.8 95 46.3
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 2.5e-11 72.8 118 38.1
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 3.3e-11 72.4 66 56.1
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 5.6e-11 71.6 103 40.8
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 1.6e-10 70.1 89 43.8
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.6e-10 70.1 103 42.7
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 2.1e-10 69.7 66 53.0
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 2.1e-10 69.7 81 51.9
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 2.8e-10 69.3 92 43.5
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 2.8e-10 69.3 95 43.2
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 2.8e-10 69.3 131 36.6
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 2.8e-10 69.3 131 37.4
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.8e-10 69.3 104 38.5
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.7e-10 68.9 67 50.7
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 4.8e-10 68.6 96 42.7
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 6.2e-10 68.2 71 47.9
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 8.1e-10 67.8 61 57.4
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 1.1e-09 67.4 106 41.5
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 1.4e-09 67.0 71 49.3
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 1.4e-09 67.0 71 49.3
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 2.4e-09 66.2 68 50.0
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 4.0e-09 65.5 68 48.5
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 2.0e-08 63.2 91 42.9
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 1.3e-07 60.5 57 49.1
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 1.3e-07 60.5 60 55.0
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 1.7e-07 60.1 62 51.6
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 8.4e-07 57.8 74 43.2
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 1.4e-06 57.0 139 28.1
Aqoxy4G02934 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 3.2e-06 55.8 53 45.3
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 3.2e-06 55.8 65 47.7
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 5.5e-06 55.1 66 47.0


User provided reference genes

Program Settings