Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 3.3e-44 181.4 97 100.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 9.0e-42 173.3 97 93.8
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 5.8e-41 170.6 97 93.8
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.0e-29 133.3 97 73.2
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 3.9e-21 104.8 100 65.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 8.7e-21 103.6 100 67.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.9e-20 102.4 99 62.6
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 1.4e-18 96.3 100 61.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 2.6e-17 92.0 100 59.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 2.6e-17 92.0 100 61.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 5.8e-17 90.9 100 59.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 5.8e-17 90.9 100 62.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 7.6e-17 90.5 99 56.6
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 1.0e-16 90.1 100 59.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 3.8e-16 88.2 100 59.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.4e-15 86.3 100 57.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 4.2e-15 84.7 99 56.6
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 4.6e-14 81.3 100 55.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 6.0e-14 80.9 100 53.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 7.9e-14 80.5 100 57.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 1.3e-13 79.7 100 55.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.8e-13 79.3 100 53.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 1.8e-13 79.3 100 57.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.8e-13 79.3 100 51.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 2.3e-13 79.0 100 52.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 3.0e-13 78.6 99 49.5
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 3.0e-13 78.6 98 52.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 3.0e-13 78.6 100 55.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 3.0e-13 78.6 100 57.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 5.1e-13 77.8 100 51.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 5.7e-12 74.3 100 53.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 5.7e-12 74.3 100 54.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 5.7e-12 74.3 100 54.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.3e-11 73.2 101 50.5
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 2.2e-11 72.4 100 52.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 2.8e-11 72.0 102 49.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 2.8e-11 72.0 100 52.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 3.7e-11 71.6 74 59.5
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 3.7e-11 71.6 100 49.0
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 6.3e-11 70.9 102 49.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 6.3e-11 70.9 91 49.5
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 6.3e-11 70.9 99 51.5
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 52.0
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 8.2e-11 70.5 76 55.3
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 52.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 8.2e-11 70.5 100 49.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 1.4e-10 69.7 102 48.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.4e-10 69.7 100 52.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 1.4e-10 69.7 100 52.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 1.4e-10 69.7 96 47.9
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.8e-10 69.3 99 54.5
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.8e-10 69.3 99 54.5
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 1.8e-10 69.3 98 51.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 3.1e-10 68.6 100 51.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 3.1e-10 68.6 98 51.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 4.1e-10 68.2 100 49.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 4.1e-10 68.2 101 52.5
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 4.1e-10 68.2 93 51.6
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 4.1e-10 68.2 93 51.6
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 4.1e-10 68.2 93 51.6
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 4.1e-10 68.2 100 48.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 4.1e-10 68.2 99 53.5
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 5.3e-10 67.8 100 50.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 5.3e-10 67.8 100 50.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 5.3e-10 67.8 100 52.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 5.3e-10 67.8 99 53.5
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 5.3e-10 67.8 101 54.5
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 9.0e-10 67.0 68 60.3
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 9.0e-10 67.0 100 50.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 1.2e-09 66.6 72 59.7
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.5e-09 66.2 99 51.5
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.5e-09 66.2 99 51.5
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 2.0e-09 65.9 100 50.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 3.4e-09 65.1 100 48.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 7.6e-09 63.9 100 49.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 7.6e-09 63.9 100 50.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.0e-08 63.5 100 48.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.7e-08 62.8 100 47.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.7e-08 62.8 98 48.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 2.2e-08 62.4 100 49.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 2.2e-08 62.4 100 49.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 2.2e-08 62.4 100 49.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 2.9e-08 62.0 102 45.1
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 2.9e-08 62.0 102 45.1
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 3.8e-08 61.6 102 45.1
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 3.8e-08 61.6 100 49.0
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 3.8e-08 61.6 61 60.7
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 6.5e-08 60.8 100 49.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 8.5e-08 60.5 100 46.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 8.5e-08 60.5 100 46.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 2.5e-07 58.9 98 48.0
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 5.5e-07 57.8 131 39.7
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 5.5e-07 57.8 61 57.4
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 1.6e-06 56.2 100 47.0
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 7.9e-06 53.9 81 49.4


User provided reference genes

Program Settings