Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.2e-169 599.7 298 100.0
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 7.1e-130 467.6 296 77.7
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 2.7e-97 359.4 285 62.5
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 3.0e-96 355.9 278 61.5
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 6.7e-96 354.8 280 60.0
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.5e-95 352.8 273 61.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.3e-95 352.1 274 60.9
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 5.6e-95 351.7 260 61.9
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 7.4e-95 351.3 277 62.5
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 7.4e-95 351.3 275 61.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.6e-94 350.1 274 60.6
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.6e-94 350.1 274 60.6
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.1e-94 349.7 260 61.5
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.8e-94 348.6 274 59.9
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 4.8e-94 348.6 273 60.4
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 8.1e-94 347.8 280 59.3
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.4e-93 347.1 258 63.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 3.1e-93 345.9 260 62.3
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.1e-93 345.9 268 60.4
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 5.3e-93 345.1 260 62.3
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 9.0e-93 344.4 273 58.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.5e-92 343.6 273 60.1
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.4e-92 342.4 272 61.0
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 4.5e-92 342.0 260 61.2
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 7.6e-92 341.3 280 59.3
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.0e-91 340.9 282 61.7
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.3e-91 340.5 278 59.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.9e-91 339.3 274 59.1
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 6.5e-91 338.2 258 62.4
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.9e-90 336.7 265 58.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 4.2e-90 335.5 276 59.8
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 4.2e-90 335.5 259 61.4
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 4.2e-90 335.5 261 59.4
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 5.5e-90 335.1 261 59.0
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 9.3e-90 334.3 274 58.4
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.2e-89 334.0 260 59.2
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.2e-89 334.0 273 55.7
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.2e-89 334.0 290 57.6
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.1e-89 333.2 246 62.2
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 4.6e-89 332.0 273 57.9
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 4.6e-89 332.0 291 58.4
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 6.0e-89 331.6 279 56.6
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 7.9e-89 331.3 260 56.9
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 7.9e-89 331.3 271 59.4
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.0e-88 330.9 275 57.8
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.8e-88 330.1 279 57.3
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.3e-88 329.7 276 59.1
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 3.0e-88 329.3 261 58.6
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 8.7e-88 327.8 263 60.5
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 8.7e-88 327.8 261 59.8
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.1e-87 327.4 261 60.2
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.5e-87 327.0 274 58.4
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 3.3e-87 325.9 272 58.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 3.3e-87 325.9 276 57.2
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 4.3e-87 325.5 263 58.2
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.7e-87 325.1 282 57.8
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 7.4e-87 324.7 259 62.9
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 9.6e-87 324.3 260 59.2
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 9.6e-87 324.3 262 56.9
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 9.6e-87 324.3 276 56.9
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.3e-86 323.9 274 56.6
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.3e-86 323.9 276 58.3
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.1e-86 323.2 276 57.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.1e-86 323.2 296 53.4
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.1e-86 323.2 293 54.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.8e-86 322.8 271 57.9
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 4.8e-86 322.0 272 57.0
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.2e-86 321.2 276 56.2
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.1e-85 318.9 271 57.2
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 4.1e-85 318.9 276 55.8
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 5.3e-85 318.5 277 56.0
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 6.9e-85 318.2 271 57.2
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 9.0e-85 317.8 231 64.9
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.5e-84 317.0 229 65.1
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 3.4e-84 315.8 273 58.6
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.0e-83 314.3 267 57.7
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 6.5e-83 311.6 270 55.6
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 3.2e-82 309.3 270 53.3
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 9.3e-82 307.8 260 58.1
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 9.3e-82 307.8 267 56.2
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.1e-81 306.6 279 57.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 3.6e-81 305.8 270 56.3
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 6.1e-81 305.1 253 57.7
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.0e-80 304.3 286 53.5
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 5.1e-80 302.0 278 56.8
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 2.5e-79 299.7 280 51.8
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.5e-79 299.7 272 54.8
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 4.3e-79 298.9 291 53.3
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.2e-76 290.8 246 56.9
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.3e-75 287.3 220 59.1
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 5.0e-75 285.4 265 50.9
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.7e-72 275.0 244 53.3
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 8.8e-72 274.6 284 47.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 2.3e-64 250.0 278 48.2
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 3.9e-64 249.2 277 46.6
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.7e-63 245.4 279 47.7
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 9.7e-63 244.6 272 47.1
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 3.7e-62 242.7 277 45.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 3.7e-62 242.7 277 45.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 3.7e-62 242.7 256 45.7
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 4.8e-62 242.3 278 46.8
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 8.2e-62 241.5 283 47.3
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.1e-61 241.1 281 48.4
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.4e-61 240.7 277 45.8
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.4e-61 240.7 280 47.1
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.8e-61 240.4 263 46.0
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.3e-61 238.8 278 46.0
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 5.3e-61 238.8 286 42.0
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 7.0e-61 238.4 274 47.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.6e-60 237.3 284 45.4
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-60 236.1 273 45.4
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.0e-59 234.6 285 44.6
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.6e-57 226.1 218 50.9
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.3e-56 223.4 280 43.2
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.0e-52 210.3 276 45.7
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 4.4e-47 192.6 278 38.8
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.1e-45 188.0 254 40.2
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.0e-44 183.7 200 47.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.7e-43 180.6 279 37.6
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.7e-41 173.3 233 40.8
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.0e-39 167.2 229 39.7
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 2.7e-36 156.8 196 44.9
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-36 155.6 242 39.7
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 7.7e-36 155.2 215 41.9
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-35 154.5 283 37.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 2.3e-35 153.7 185 44.3
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.9e-35 153.3 215 41.9
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.8e-35 152.9 193 48.2
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-34 151.4 181 45.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.9e-34 150.6 204 43.1
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 7.3e-34 148.7 196 44.4
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 6.8e-32 142.1 246 36.6
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 5.7e-31 139.0 292 35.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.7e-30 137.5 140 48.6
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.4e-29 134.4 106 57.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 4.6e-28 129.4 140 47.9
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 5.9e-28 129.0 171 44.4
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.7e-22 110.9 85 56.5
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 2.9e-22 110.2 188 35.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-21 107.8 196 37.2
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-21 107.8 196 37.2
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.0e-19 100.1 95 53.7
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.1e-18 98.2 234 32.1
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 4.9e-14 82.8 150 40.7
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 1.9e-13 80.9 70 50.0
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 9.2e-13 78.6 64 54.7
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 9.2e-13 78.6 64 54.7
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.3e-08 63.9 75 46.7
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 1.2e-07 61.6 135 28.1
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 2.2e-06 57.4 116 30.2


User provided reference genes

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