Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0582800 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 1.1e-82 310.1 177 100.0
Zm00001eb245460 Zea mays HOM05D000913 ORTHO05D000687 5.8e-23 111.7 177 50.8
Zm00001eb080230 Zea mays HOM05D000913 ORTHO05D000687 1.9e-18 96.7 182 43.4
Os04g0468600 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 9.6e-18 94.4 89 64.0
Os02g0582600 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 3.2e-13 79.3 84 54.8
Gohir.D07G169300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.1e-08 62.4 72 43.1
Gorai.001G189300 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.1e-08 62.4 72 43.1
DCAR_019657 Daucus carota HOM05D000913 ORTHO05D000687 6.9e-08 61.6 77 40.3
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 6.9e-08 61.6 77 41.6
Gohir.A07G162700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.9e-08 61.6 72 43.1
QL04p074166 Quercus lobata HOM05D000913 ORTHO05D000687 6.9e-08 61.6 73 43.8
QL12p009146 Quercus lobata HOM05D000913 ORTHO05D000687 9.0e-08 61.2 73 43.8
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 1.2e-07 60.8 77 45.5
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 1.5e-07 60.5 72 45.8
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 1.5e-07 60.5 72 38.9
QL04p074171 Quercus lobata HOM05D000913 ORTHO05D000687 2.0e-07 60.1 73 43.8
QL04p074148 Quercus lobata HOM05D000913 ORTHO05D000687 2.6e-07 59.7 61 47.5
DCAR_021079 Daucus carota HOM05D000913 ORTHO05D000687 3.4e-07 59.3 77 39.0
QL04p074221 Quercus lobata HOM05D000913 ORTHO05D000687 3.4e-07 59.3 73 43.8
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 5.9e-07 58.5 81 42.0
QL04p074182 Quercus lobata HOM05D000913 ORTHO05D000687 5.9e-07 58.5 73 43.8
Dinv03822 Davidia involucrata HOM05D000913 ORTHO05D000687 7.7e-07 58.2 69 44.9
QL12p009157 Quercus lobata HOM05D000913 ORTHO05D000687 7.7e-07 58.2 73 42.5
DCAR_008755 Daucus carota HOM05D000913 ORTHO05D000687 1.0e-06 57.8 81 40.7
FAN11G2899 Fragaria x ananassa HOM05D009841 ORTHO05D012869 1.0e-06 57.8 75 45.3
Lalb_Chr04g0250241 Lupinus albus HOM05D000913 ORTHO05D000687 1.0e-06 57.8 69 46.4
QL04p074116 Quercus lobata HOM05D000913 ORTHO05D000687 1.0e-06 57.8 73 41.1
DCAR_008754 Daucus carota HOM05D000913 ORTHO05D000687 1.3e-06 57.4 59 49.2
Os09g0328066 Oryza sativa ssp. japonica HOM05D022561 ORTHO05D037050 1.3e-06 57.4 47 61.7
GSVIVG01030137001 Vitis vinifera HOM05D000913 ORTHO05D000687 1.3e-06 57.4 72 40.3
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.7e-06 57.0 72 40.3
QL04p074188 Quercus lobata HOM05D000913 ORTHO05D000687 1.7e-06 57.0 73 42.5
RcHm_v2.0_Chr5g0042671 Rosa chinensis HOM05D000913 ORTHO05D000687 1.7e-06 57.0 60 45.0
Zm00001eb245480 Zea mays HOM05D000913 ORTHO05D000687 1.7e-06 57.0 72 47.2
Potri.014G171300 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.2e-06 56.6 72 38.9
Thecc.01G201000 Theobroma cacao HOM05D000913 ORTHO05D000687 2.2e-06 56.6 72 37.5
COL.COLO4_07756 Corchorus olitorius HOM05D000913 ORTHO05D000687 2.9e-06 56.2 53 50.9
Glyma.09G016400 Glycine max HOM05D000913 ORTHO05D000687 2.9e-06 56.2 72 44.4
DCAR_021080 Daucus carota HOM05D000913 ORTHO05D000687 3.8e-06 55.8 72 37.5
Actinidia12346 Actinidia chinensis HOM05D000913 ORTHO05D000687 5.0e-06 55.5 110 32.7
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 5.0e-06 55.5 69 44.9
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 5.0e-06 55.5 72 38.9
FAN16G2117 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.0e-06 55.5 71 46.5
Potri.009G048300 Populus trichocarpa HOM05D000913 ORTHO05D000687 5.0e-06 55.5 75 36.0
Prupe.4G234700 Prunus persica HOM05D000913 ORTHO05D000687 5.0e-06 55.5 72 43.1
Zm00001eb080210 Zea mays HOM05D000913 ORTHO05D000687 5.0e-06 55.5 80 43.8
DCAR_019660 Daucus carota HOM05D000913 ORTHO05D000687 6.5e-06 55.1 71 36.6
Gohir.A11G147300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.5e-06 55.1 72 37.5
Gohir.D11G154000 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.5e-06 55.1 72 37.5
Gohir.D11G154200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.5e-06 55.1 72 37.5
Gorai.007G164100 Gossypium raimondii HOM05D000913 ORTHO05D000687 6.5e-06 55.1 72 37.5
HanXRQChr11g0329801 Helianthus annuus HOM05D000913 ORTHO05D000687 6.5e-06 55.1 79 32.9
LjContig00029g0025163 Lotus japonicus HOM05D000913 ORTHO05D000687 6.5e-06 55.1 64 45.3
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.5e-06 55.1 73 41.1
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 6.5e-06 55.1 69 42.0
vmacro12047 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 6.5e-06 55.1 58 43.1
Zm00001eb080130 Zea mays HOM05D000913 ORTHO05D000687 6.5e-06 55.1 79 39.2
CiPaw.16G094900 Carya illinoinensis HOM05D000913 ORTHO05D000687 8.5e-06 54.7 66 45.5
Ciclev10018068m.g Citrus clementina HOM05D000913 ORTHO05D000687 8.5e-06 54.7 68 42.6
FvH4_3g24100 Fragaria vesca HOM05D000913 ORTHO05D000687 8.5e-06 54.7 57 43.9
Gorai.007G164300 Gossypium raimondii HOM05D000913 ORTHO05D000687 8.5e-06 54.7 72 36.1
Potri.009G048100 Populus trichocarpa HOM05D000913 ORTHO05D000687 8.5e-06 54.7 75 36.0
QL04p074203 Quercus lobata HOM05D000913 ORTHO05D000687 8.5e-06 54.7 96 39.6


User provided reference genes

Program Settings