Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 2.9e-189 666.4 846 100.0
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 1.1e-92 345.5 818 81.5
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 3.3e-31 141.4 192 37.5
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 4.0e-29 134.4 192 37.0
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 9.0e-29 133.3 202 35.1
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 3.4e-28 131.3 181 37.0
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 1.3e-27 129.4 208 34.6
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.3e-27 129.4 208 34.6
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.1e-26 126.3 176 36.4
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-26 125.9 207 33.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.9e-26 125.6 178 36.0
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 7.1e-26 123.6 207 33.3
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.1e-26 123.6 192 35.4
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.1e-26 123.6 207 33.3
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.6e-25 122.5 207 32.9
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 2.1e-25 122.1 192 34.9
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 1.0e-24 119.8 207 31.9
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.7e-24 119.0 217 33.2
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 1.1e-23 116.3 213 31.9
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 1.1e-23 116.3 174 33.3
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 1.3e-22 112.8 178 34.3
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 4.8e-22 110.9 216 31.0
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 8.1e-22 110.2 199 34.7
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 8.1e-22 110.2 199 34.7
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 8.1e-22 110.2 199 34.7
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 3.1e-21 108.2 199 32.7
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 6.9e-21 107.1 215 29.3
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 7.6e-20 103.6 175 32.6
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 5.4e-18 97.4 182 31.3
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 9.3e-18 96.7 175 32.0
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.2e-17 96.3 160 33.8
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.6e-17 95.9 153 34.6
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 2.1e-17 95.5 192 30.2
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 4.6e-17 94.4 200 29.5
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 6.0e-17 94.0 182 31.3
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 2.3e-16 92.0 135 34.8
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.0e-16 91.7 178 30.3
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 3.0e-16 91.7 188 29.3
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 3.9e-16 91.3 176 28.4
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 8.7e-16 90.1 178 30.3
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 5.6e-15 87.4 208 28.4
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 1.6e-14 85.9 217 26.7
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 1.6e-14 85.9 163 30.1
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 4.8e-14 84.3 226 26.5
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 4.8e-14 84.3 186 28.0
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.4e-13 82.0 178 28.7
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 3.1e-13 81.6 194 27.3
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 4.0e-13 81.3 171 28.7
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.0e-13 81.3 171 28.7
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 5.3e-13 80.9 195 26.2
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 6.9e-13 80.5 150 29.3
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 9.0e-13 80.1 178 28.7
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.4e-12 78.2 178 27.5
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 4.5e-12 77.8 207 27.5
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 4.5e-12 77.8 164 26.8
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 7.6e-12 77.0 214 25.2
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 9.9e-12 76.6 194 26.3
Zm00001eb037970 Zea mays HOM05D003210 ORTHO05D000001 1.3e-11 76.3 198 26.3
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 3.8e-11 74.7 188 26.1
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 8.4e-11 73.6 212 25.9
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.4e-10 72.8 188 24.5
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 1.9e-10 72.4 200 27.0
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 2.4e-10 72.0 200 26.5
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 3.2e-10 71.6 138 30.4
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 3.2e-10 71.6 188 23.9
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 3.2e-10 71.6 203 24.6
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.2e-10 71.6 178 26.4
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 4.2e-10 71.2 190 25.8
HanXRQChr07g0203991 Helianthus annuus HOM05D000162 ORTHO05D000090 7.1e-10 70.5 164 26.2
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.6e-09 69.3 205 23.9
HanXRQChr03g0083291 Helianthus annuus HOM05D000162 ORTHO05D000090 2.1e-09 68.9 157 25.5
HanXRQChr11g0341941 Helianthus annuus HOM05D000162 ORTHO05D000090 2.1e-09 68.9 161 24.8
HanXRQChr07g0203521 Helianthus annuus HOM05D000162 ORTHO05D000090 3.5e-09 68.2 184 25.5
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 3.5e-09 68.2 176 26.7
HanXRQChr14g0435461 Helianthus annuus HOM05D000162 ORTHO05D000090 6.0e-09 67.4 164 25.6
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 7.9e-09 67.0 192 25.0
HanXRQChr13g0420121 Helianthus annuus HOM05D000162 ORTHO05D000090 1.8e-08 65.9 157 24.2
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 1.8e-08 65.9 178 25.3
HanXRQChr07g0204971 Helianthus annuus HOM05D000162 ORTHO05D000090 3.0e-08 65.1 161 22.4
HanXRQChr13g0420241 Helianthus annuus HOM05D000162 ORTHO05D000090 3.0e-08 65.1 157 24.8
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.0e-08 65.1 178 24.7
Hma1.2p1_2917F.1_g330320 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 5.1e-08 64.3 171 22.8
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 6.7e-08 63.9 193 25.4
Migut.G01202 Erythranthe guttata HOM05D000162 ORTHO05D000090 8.7e-08 63.5 142 26.1
vmacro15415 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 8.7e-08 63.5 133 25.6
Cc07_g18960 Coffea canephora HOM05D000162 ORTHO05D000090 1.5e-07 62.8 157 25.5
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.5e-07 62.8 216 23.6
Hma1.2p1_1276F.1_g272060 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 1.5e-07 62.8 159 24.5
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 1.5e-07 62.8 155 22.6
Actinidia04470 Actinidia chinensis HOM05D000162 ORTHO05D000090 1.9e-07 62.4 136 24.3
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 1.9e-07 62.4 148 27.0
Dinv41259 Davidia involucrata HOM05D000162 ORTHO05D000090 2.5e-07 62.0 155 22.6
Migut.G01184 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.5e-07 62.0 148 27.0
Migut.G01194 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.5e-07 62.0 148 27.0
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.5e-07 62.0 162 27.8
HanXRQChr07g0204091 Helianthus annuus HOM05D000162 ORTHO05D000090 2.5e-07 62.0 160 25.0
HanXRQChr13g0420371 Helianthus annuus HOM05D000162 ORTHO05D000090 2.5e-07 62.0 157 23.6
HanXRQChr15g0491431 Helianthus annuus HOM05D000162 ORTHO05D000090 2.5e-07 62.0 157 24.2
Lalb_Chr07g0181761 Lupinus albus HOM05D001779 ORTHO05D001753 2.5e-07 62.0 155 22.6
Actinidia08438 Actinidia chinensis HOM05D000162 ORTHO05D000090 3.3e-07 61.6 118 28.0
CDE07G0106 Ceratophyllum demersum HOM05D005973 ORTHO05D007285 3.3e-07 61.6 158 27.2
Migut.G00831 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.3e-07 61.6 165 23.6
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 3.3e-07 61.6 203 23.6
HanXRQChr13g0418851 Helianthus annuus HOM05D000162 ORTHO05D000090 3.3e-07 61.6 157 22.9
HanXRQChr14g0435491 Helianthus annuus HOM05D000162 ORTHO05D000090 3.3e-07 61.6 160 23.1
SalBow8G3698 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.3e-07 61.6 168 23.2
PGSC0003DMG400003403 Solanum tuberosum HOM05D000162 ORTHO05D000090 3.3e-07 61.6 159 23.3
Migut.G01188 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.3e-07 61.2 160 24.4
SalBow1G7352 Salvia bowleyana HOM05D000162 ORTHO05D000090 4.3e-07 61.2 165 24.2
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 5.6e-07 60.8 153 24.8
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 5.6e-07 60.8 174 24.1
ECA233G1617 Erigeron canadensis HOM05D000162 ORTHO05D000090 5.6e-07 60.8 207 24.2
Migut.G01164 Erythranthe guttata HOM05D000162 ORTHO05D000090 5.6e-07 60.8 148 26.4
TPR.G12657 Trifolium pratense HOM05D001779 ORTHO05D001753 5.6e-07 60.8 155 22.6
vmacro08467 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.6e-07 60.8 158 23.4
Migut.G00851 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.4e-07 60.5 155 25.2
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 7.4e-07 60.5 219 21.5
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 7.4e-07 60.5 168 24.4
HanXRQChr13g0418841 Helianthus annuus HOM05D000162 ORTHO05D000090 9.6e-07 60.1 157 23.6
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 1.3e-06 59.7 137 26.3
Migut.G00829 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.3e-06 59.7 165 23.0
Migut.G01201 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.3e-06 59.7 158 24.1
Migut.G01206 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.3e-06 59.7 165 24.8
Rhsim04G0181900 Rhododendron simsii HOM05D000162 ORTHO05D000090 1.3e-06 59.7 118 28.8
SalBow1G3819 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.3e-06 59.7 165 24.2
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 1.3e-06 59.7 168 24.4
vmacro15544 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.3e-06 59.7 137 23.4
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 1.6e-06 59.3 168 23.8
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 1.6e-06 59.3 155 26.5
HanXRQChr10g0284831 Helianthus annuus HOM05D000162 ORTHO05D000090 1.6e-06 59.3 162 24.7
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 1.6e-06 59.3 135 23.0
Rhsim04G0181600 Rhododendron simsii HOM05D000162 ORTHO05D000090 1.6e-06 59.3 140 25.7
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 1.6e-06 59.3 153 24.2
CAN.G1681.10 Capsicum annuum HOM05D007128 ORTHO05D009059 2.1e-06 58.9 112 33.0
AUR62002564 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.1e-06 58.9 155 21.9
Migut.G01180 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.1e-06 58.9 165 23.0
Lsat_1_v5_gn_0_17660 Lactuca sativa HOM05D000162 ORTHO05D000090 2.1e-06 58.9 160 23.8
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 2.8e-06 58.5 148 29.7
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 2.8e-06 58.5 161 23.6
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 2.8e-06 58.5 154 25.3
Cc03_g00220 Coffea canephora HOM05D001779 ORTHO05D001753 2.8e-06 58.5 155 21.3
Hma1.2p1_1276F.1_g272140 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 2.8e-06 58.5 161 23.6
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 2.8e-06 58.5 155 23.2
Rhsim01G0180200 Rhododendron simsii HOM05D004271 ORTHO05D006011 2.8e-06 58.5 155 23.9
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 2.8e-06 58.5 159 22.6
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 2.8e-06 58.5 155 23.2
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 3.7e-06 58.2 153 24.2
CAN.G1440.7 Capsicum annuum HOM05D000162 ORTHO05D000090 3.7e-06 58.2 125 24.0
CDE04G1668 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 3.7e-06 58.2 157 24.2
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.7e-06 58.2 171 23.4
Migut.G01052 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.7e-06 58.2 148 23.0
Migut.G01196 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.7e-06 58.2 157 23.6
FAN12G4042 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.7e-06 58.2 149 26.2
Hma1.2p1_0310F.1_g120980 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 3.7e-06 58.2 155 23.2
SalBow1G2657 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.7e-06 58.2 166 23.5
Solyc01g057200.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 3.7e-06 58.2 155 22.6
CANSAT78G1122 Cannabis sativa HOM05D000162 ORTHO05D000090 4.8e-06 57.8 147 23.1
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 4.8e-06 57.8 153 24.8
Psat0ss1196g0240 Pisum sativum HOM05D001779 ORTHO05D001753 4.8e-06 57.8 155 21.3
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 6.2e-06 57.4 155 22.6
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 6.2e-06 57.4 154 25.3
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 6.2e-06 57.4 154 26.0
Migut.G01186 Erythranthe guttata HOM05D000162 ORTHO05D000090 6.2e-06 57.4 166 21.7
FAN07G0256 Fragaria x ananassa HOM05D001779 ORTHO05D001753 6.2e-06 57.4 149 26.2
HanXRQChr13g0420861 Helianthus annuus HOM05D000162 ORTHO05D000090 6.2e-06 57.4 154 22.1
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 6.2e-06 57.4 70 37.1
RcHm_v2.0_Chr4g0427331 Rosa chinensis HOM05D001779 ORTHO05D001753 6.2e-06 57.4 154 24.7
SalBow1G8252 Salvia bowleyana HOM05D000162 ORTHO05D000090 6.2e-06 57.4 165 24.2
SalBow3G3365 Salvia bowleyana HOM05D000162 ORTHO05D000090 6.2e-06 57.4 155 26.5
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 8.2e-06 57.0 86 32.6
BolC2t08693H Brassica oleracea HOM05D005706 ORTHO05D007474 8.2e-06 57.0 148 26.4
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 8.2e-06 57.0 52 42.3
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 8.2e-06 57.0 139 25.2
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 8.2e-06 57.0 139 25.2
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 8.2e-06 57.0 145 24.1
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 8.2e-06 57.0 180 20.0
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 8.2e-06 57.0 173 22.5
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 8.2e-06 57.0 138 22.5
SGA_v2.0_scaffold90G27754 Striga asiatica HOM05D000001 ORTHO05D010224 8.2e-06 57.0 181 28.2


User provided reference genes

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