Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0580700 Oryza sativa ssp. japonica HOM05D002627 ORTHO05D002823 0.0e+00 1075.8 583 100.0
Zm00001eb245240 Zea mays HOM05D002627 ORTHO05D002823 4.3e-139 499.2 628 52.5
Zm00001eb183280 Zea mays HOM05D002627 ORTHO05D002823 1.3e-132 477.6 610 52.5
Sopen03g032720 Solanum pennellii HOM05D002627 ORTHO05D002823 1.2e-24 119.0 613 26.9
PGSC0003DMG400024465 Solanum tuberosum HOM05D002627 ORTHO05D002823 2.1e-24 118.2 606 27.7
TAR374G0258 Trochodendron aralioides HOM05D002627 ORTHO05D002823 6.6e-23 113.2 608 25.3
Medtr4g107200 Medicago truncatula HOM05D002627 ORTHO05D002823 7.6e-19 99.8 654 26.0
Cc04_g16140 Coffea canephora HOM05D002627 ORTHO05D002823 3.8e-18 97.4 227 33.9
Hund02700 Selenicereus undatus HOM05D002627 ORTHO05D002823 3.8e-18 97.4 213 36.2
Sc04g0002230 Simmondsia chinensis HOM05D002627 ORTHO05D002823 6.4e-18 96.7 214 36.4
CDE02G3017 Ceratophyllum demersum HOM05D002627 ORTHO05D002823 9.2e-17 92.8 223 32.3
Gohir.D11G031000 Gossypium hirsutum HOM05D002627 ORTHO05D002823 1.2e-16 92.4 307 30.9
Psat7g131040 Pisum sativum HOM05D002627 ORTHO05D002823 1.6e-16 92.0 650 23.5
Gohir.A11G028200 Gossypium hirsutum HOM05D002627 ORTHO05D002823 2.7e-16 91.3 224 33.0
Ca_21874_v3 Cicer arietinum L. HOM05D002627 ORTHO05D002823 4.6e-16 90.5 626 25.2
Gorai.007G033900 Gossypium raimondii HOM05D002627 ORTHO05D002823 4.6e-16 90.5 294 30.6
Nitab4.5_0000642g0200 Nicotiana tabacum HOM05D002627 ORTHO05D002823 1.0e-15 89.4 341 28.4
Cpa.g.sc35.14 Carica papaya HOM05D002627 ORTHO05D002823 1.3e-15 89.0 205 33.7
Duzib068G0784 Durio zibethinus HOM05D002627 ORTHO05D002823 2.3e-15 88.2 298 29.9
Lj9C455G16 Lonicera japonica HOM05D002627 ORTHO05D002823 3.9e-15 87.4 223 33.6
Lj5A119G36 Lonicera japonica HOM05D002627 ORTHO05D002823 6.6e-15 86.7 281 29.2
EL10Ac5g10867 Beta vulgaris HOM05D002627 ORTHO05D002823 8.6e-15 86.3 205 33.2
Dinv13122 Davidia involucrata HOM05D002627 ORTHO05D002823 8.6e-15 86.3 602 23.8
MD06G1183100 Malus domestica HOM05D002627 ORTHO05D002823 1.1e-14 85.9 258 29.8
Nitab4.5_0002875g0040 Nicotiana tabacum HOM05D002627 ORTHO05D002823 1.1e-14 85.9 335 27.2
Nn3g17059 Nelumbo nucifera HOM05D002627 ORTHO05D002823 1.5e-14 85.5 614 24.6
Haze_14609 Corylus avellana HOM05D001839 ORTHO05D001867 1.9e-14 85.1 614 26.2
CiPaw.03G032500 Carya illinoinensis HOM05D002627 ORTHO05D002823 2.5e-14 84.7 624 26.1
Glyma.13G067300 Glycine max HOM05D002627 ORTHO05D002823 2.5e-14 84.7 216 34.3
Glyma.19G017100 Glycine max HOM05D002627 ORTHO05D002823 2.5e-14 84.7 213 34.7
CDE06G2464 Ceratophyllum demersum HOM05D002627 ORTHO05D002823 3.3e-14 84.3 272 28.3
TAR371G0654 Trochodendron aralioides HOM05D002627 ORTHO05D002823 4.3e-14 84.0 627 25.2
TAR629G2000 Trochodendron aralioides HOM05D002627 ORTHO05D002823 4.3e-14 84.0 221 31.2
Lj2g0010034 Lotus japonicus HOM05D002627 ORTHO05D002823 7.3e-14 83.2 208 35.1
PSO478G0854 Papaver somniferum HOM05D002627 ORTHO05D002823 9.6e-14 82.8 202 30.7
Phvul.004G023400 Phaseolus vulgaris HOM05D002627 ORTHO05D002823 9.6e-14 82.8 210 33.8
Lsat_1_v5_gn_4_74501 Lactuca sativa HOM05D002627 ORTHO05D002823 1.2e-13 82.4 209 34.0
FAN09G0791 Fragaria x ananassa HOM05D002627 ORTHO05D002823 1.6e-13 82.0 226 33.2
HanXRQChr07g0198571 Helianthus annuus HOM05D002627 ORTHO05D002823 1.6e-13 82.0 195 34.4
VMungo1215G0528 Vigna mungo HOM05D002627 ORTHO05D002823 1.6e-13 82.0 248 29.8
ECA232G3085 Erigeron canadensis HOM05D002627 ORTHO05D002823 2.1e-13 81.6 215 34.9
Eucgr.J02157 Eucalyptus grandis HOM05D002627 ORTHO05D002823 2.1e-13 81.6 617 25.8
PSO591G0190 Papaver somniferum HOM05D002627 ORTHO05D002823 2.1e-13 81.6 586 25.9
Ciclev10019847m.g Citrus clementina HOM05D002627 ORTHO05D002823 2.8e-13 81.3 311 29.6
FAN05G1906 Fragaria x ananassa HOM05D002627 ORTHO05D002823 2.8e-13 81.3 226 34.1
HanXRQChr16g0503461 Helianthus annuus HOM05D002627 ORTHO05D002823 2.8e-13 81.3 215 33.0
FvH4_6g49700 Fragaria vesca HOM05D002627 ORTHO05D002823 3.6e-13 80.9 228 32.9
FAN13G1829 Fragaria x ananassa HOM05D002627 ORTHO05D002823 3.6e-13 80.9 238 31.1
FAN14G0027 Fragaria x ananassa HOM05D002627 ORTHO05D002823 3.6e-13 80.9 220 33.6
Lj4g0005532 Lotus japonicus HOM05D002627 ORTHO05D002823 3.6e-13 80.9 218 32.6
Duzib205G0221 Durio zibethinus HOM05D002627 ORTHO05D002823 4.7e-13 80.5 243 33.3
Ah.02g112860 Amaranthus hybridus HOM05D002627 ORTHO05D002823 6.2e-13 80.1 271 31.0
CiPaw.04G021400 Carya illinoinensis HOM05D002627 ORTHO05D002823 6.2e-13 80.1 607 24.9
Lj2g0016402 Lotus japonicus HOM05D002627 ORTHO05D002823 6.2e-13 80.1 208 33.7
SGA_v2.0_scaffold114G31862 Striga asiatica HOM05D002627 ORTHO05D002823 6.2e-13 80.1 223 30.5
FAN04G2684 Fragaria x ananassa HOM05D002627 ORTHO05D002823 1.1e-12 79.3 237 33.3
Atru.chr9.2380 Acer truncatum HOM05D002627 ORTHO05D002823 1.8e-12 78.6 290 30.0
PGR083G1932 Punica granatum HOM05D002627 ORTHO05D002823 1.8e-12 78.6 627 25.5
THA.LOC104805426 Tarenaya hassleriana HOM05D002627 ORTHO05D002823 1.8e-12 78.6 643 25.7
Migut.H00873 Erythranthe guttata HOM05D002627 ORTHO05D002823 2.4e-12 78.2 232 34.5
COL.COLO4_22897 Corchorus olitorius HOM05D002627 ORTHO05D002823 9.0e-12 76.3 266 30.8
RcHm_v2.0_Chr7g0179941 Rosa chinensis HOM05D002627 ORTHO05D002823 9.0e-12 76.3 207 33.3
Atru.chr8.2472 Acer truncatum HOM05D002627 ORTHO05D002823 1.2e-11 75.9 639 24.7
Duzib147G1604 Durio zibethinus HOM05D002627 ORTHO05D002823 1.2e-11 75.9 568 25.7
Sc11g0006860 Simmondsia chinensis HOM05D002627 ORTHO05D002823 1.2e-11 75.9 335 27.2
THA.LOC104822818 Tarenaya hassleriana HOM05D002627 ORTHO05D002823 1.5e-11 75.5 625 25.0
Haze_07418 Corylus avellana HOM05D002627 ORTHO05D002823 2.0e-11 75.1 625 24.5
Sabra16G0229400 Salix brachista HOM05D002627 ORTHO05D002823 2.0e-11 75.1 250 34.0
TPR.G38438 Trifolium pratense HOM05D002627 ORTHO05D002823 2.0e-11 75.1 632 22.8
PSO832G0166 Papaver somniferum HOM05D002627 ORTHO05D002823 3.4e-11 74.3 209 30.6
MD14G1189100 Malus domestica HOM05D002627 ORTHO05D002823 7.6e-11 73.2 262 30.2
Peaxi162Scf00017g02214 Petunia axillaris HOM05D002627 ORTHO05D002823 7.6e-11 73.2 371 25.9
Lj7A404G41 Lonicera japonica HOM05D002627 ORTHO05D002823 9.9e-11 72.8 213 29.6
Phvul.003G195900 Phaseolus vulgaris HOM05D002627 ORTHO05D002823 1.3e-10 72.4 428 25.9
GSVIVG01007845001 Vitis vinifera HOM05D002627 ORTHO05D002823 1.7e-10 72.0 253 29.6
Aa31LG2G4640 Aethionema arabicum HOM05D002627 ORTHO05D002823 2.2e-10 71.6 303 27.4
Manes.06G099300 Manihot esculenta HOM05D002627 ORTHO05D002823 2.2e-10 71.6 624 23.9
GSVIVG01032571001 Vitis vinifera HOM05D002627 ORTHO05D002823 2.2e-10 71.6 103 38.8
arahy.Tifrunner.gnm1.ann1.KN857F Arachis hypogaea HOM05D002627 ORTHO05D002823 2.9e-10 71.2 291 29.6
Prupe.5G181800 Prunus persica HOM05D002627 ORTHO05D002823 2.9e-10 71.2 613 23.7
Sed0022597 Sechium edule HOM05D002627 ORTHO05D002823 3.8e-10 70.9 231 31.2
Cpa.g.sc14.65 Carica papaya HOM05D002627 ORTHO05D002823 4.9e-10 70.5 618 23.8
QL10p013948 Quercus lobata HOM05D002627 ORTHO05D002823 4.9e-10 70.5 645 24.2
TWI56G0261 Tripterygium wilfordii HOM05D002627 ORTHO05D002823 4.9e-10 70.5 201 34.8
Sed0003853 Sechium edule HOM05D002627 ORTHO05D002823 8.4e-10 69.7 249 30.5
PSO161G0001 Papaver somniferum HOM05D002627 ORTHO05D002823 1.1e-09 69.3 458 23.4
ClCG01G014180 Citrullus lanatus HOM05D002627 ORTHO05D002823 1.4e-09 68.9 277 28.5
Solyc06g071250.4 Solanum lycopersicum HOM05D002627 ORTHO05D002823 1.4e-09 68.9 115 35.7
Thecc.04G069700 Theobroma cacao HOM05D002627 ORTHO05D002823 1.9e-09 68.6 636 24.4
CSS0022026 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 3.2e-09 67.8 229 28.4
CANSAT80G1418 Cannabis sativa HOM05D002627 ORTHO05D002823 3.2e-09 67.8 258 27.9
Gorai.003G071800 Gossypium raimondii HOM05D002627 ORTHO05D002823 3.2e-09 67.8 523 24.3
HanXRQChr14g0449441 Helianthus annuus HOM05D002627 ORTHO05D002823 3.2e-09 67.8 202 33.2
unitig_744.g24394 Utricularia gibba HOM05D002627 ORTHO05D002823 3.2e-09 67.8 272 29.0
Sopen06g027560 Solanum pennellii HOM05D002627 ORTHO05D002823 4.2e-09 67.4 115 35.7
SGA_v2.0_scaffold56G20087 Striga asiatica HOM05D002627 ORTHO05D002823 4.2e-09 67.4 274 30.3
Gohir.D03G089600 Gossypium hirsutum HOM05D002627 ORTHO05D002823 7.1e-09 66.6 521 24.2
Potri.017G074300 Populus trichocarpa HOM05D002627 ORTHO05D002823 7.1e-09 66.6 614 24.9
RcHm_v2.0_Chr2g0169731 Rosa chinensis HOM05D002627 ORTHO05D002823 7.1e-09 66.6 629 23.8
BcaB03g12942 Brassica carinata HOM05D002627 ORTHO05D002823 9.3e-09 66.2 193 30.6
AUR62021791 Chenopodium quinoa HOM05D002627 ORTHO05D002823 9.3e-09 66.2 248 30.2
MELO3C002230.2 Cucumis melo HOM05D002627 ORTHO05D002823 9.3e-09 66.2 278 28.4
Aqoxy3G00856 Aquilegia oxysepala HOM05D002627 ORTHO05D002823 1.2e-08 65.9 286 29.0
A08p30060 Brassica napus HOM05D002627 ORTHO05D002823 1.2e-08 65.9 189 30.2
BolC8t49534H Brassica oleracea HOM05D002627 ORTHO05D002823 1.2e-08 65.9 187 31.0
Potri.001G350000 Populus trichocarpa HOM05D002627 ORTHO05D002823 1.6e-08 65.5 645 24.7
HPP92_017082 Vanilla planifolia HOM05D002627 ORTHO05D002823 1.6e-08 65.5 601 25.0
BcaC07g38971 Brassica carinata HOM05D002627 ORTHO05D002823 2.7e-08 64.7 187 30.5
C08p19100 Brassica napus HOM05D002627 ORTHO05D002823 2.7e-08 64.7 187 30.5
CsaV3_1G008130 Cucumis sativus L. HOM05D002627 ORTHO05D002823 2.7e-08 64.7 278 26.6
Gohir.A09G023200 Gossypium hirsutum HOM05D002627 ORTHO05D002823 2.7e-08 64.7 114 37.7
Manes.15G177600 Manihot esculenta HOM05D002627 ORTHO05D002823 2.7e-08 64.7 295 28.1
THA.LOC104809226 Tarenaya hassleriana HOM05D002627 ORTHO05D002823 2.7e-08 64.7 280 26.1
AL2G34740 Arabidopsis lyrata HOM05D002627 ORTHO05D002823 3.5e-08 64.3 106 34.9
MELO3C021486.2 Cucumis melo HOM05D002627 ORTHO05D002823 3.5e-08 64.3 266 24.8
Duzib187G1647 Durio zibethinus HOM05D002627 ORTHO05D002823 3.5e-08 64.3 101 39.6
BraA08t34941Z Brassica rapa HOM05D002627 ORTHO05D002823 4.6e-08 63.9 188 30.3
DCAR_016514 Daucus carota HOM05D002627 ORTHO05D002823 4.6e-08 63.9 221 29.9
Gorai.006G026500 Gossypium raimondii HOM05D002627 ORTHO05D002823 4.6e-08 63.9 108 38.0
FAN08G1526 Fragaria x ananassa HOM05D002627 ORTHO05D002823 6.0e-08 63.5 238 28.6
Ciclev10011309m.g Citrus clementina HOM05D002627 ORTHO05D002823 7.8e-08 63.2 630 23.0
Migut.D01893 Erythranthe guttata HOM05D002627 ORTHO05D002823 7.8e-08 63.2 338 26.0
Sp1g16970 Schrenkiella parvula HOM05D002627 ORTHO05D002823 7.8e-08 63.2 271 30.3
DCAR_011177 Daucus carota HOM05D002627 ORTHO05D002823 1.0e-07 62.8 193 27.5
Dinv02653 Davidia involucrata HOM05D002627 ORTHO05D002823 1.0e-07 62.8 581 24.3
Sed0010058 Sechium edule HOM05D002627 ORTHO05D002823 1.0e-07 62.8 274 26.3
ATR0624G126 Amborella trichopoda HOM05D002627 ORTHO05D002823 1.3e-07 62.4 214 29.0
HanXRQChr02g0044071 Helianthus annuus HOM05D002627 ORTHO05D002823 1.3e-07 62.4 107 37.4
HanXRQChr02g0044081 Helianthus annuus HOM05D002627 ORTHO05D002823 1.3e-07 62.4 107 37.4
HanXRQChr02g0045311 Helianthus annuus HOM05D002627 ORTHO05D002823 1.3e-07 62.4 107 37.4
AT1G74860 Arabidopsis thaliana HOM05D002627 ORTHO05D002823 1.7e-07 62.0 112 34.8
BcaC06g33739 Brassica carinata HOM05D002627 ORTHO05D002823 1.7e-07 62.0 118 37.3
Cc07_g02820 Coffea canephora HOM05D002627 ORTHO05D002823 1.7e-07 62.0 203 30.0
FvH4_5g16190 Fragaria vesca HOM05D002627 ORTHO05D002823 1.7e-07 62.0 212 27.8
FAN18G0871 Fragaria x ananassa HOM05D002627 ORTHO05D002823 1.7e-07 62.0 232 28.0
Gohir.D09G022500 Gossypium hirsutum HOM05D002627 ORTHO05D002823 1.7e-07 62.0 108 37.0
CAN.G853.36 Capsicum annuum HOM05D002627 ORTHO05D002823 2.3e-07 61.6 559 24.9
Aqoxy3G03169 Aquilegia oxysepala HOM05D002627 ORTHO05D002823 3.0e-07 61.2 605 23.1
EL10Ac2g02900 Beta vulgaris HOM05D002627 ORTHO05D002823 3.0e-07 61.2 228 29.8
BolC7t44261H Brassica oleracea HOM05D002627 ORTHO05D002823 3.0e-07 61.2 109 37.6
MD17G1043600 Malus domestica HOM05D002627 ORTHO05D002823 3.0e-07 61.2 237 29.5
Carub.0001s1864 Capsella rubella HOM05D002627 ORTHO05D002823 3.9e-07 60.8 150 36.0
Migut.I00077 Erythranthe guttata HOM05D002627 ORTHO05D002823 5.1e-07 60.5 263 25.9
Gohir.A03G076100 Gossypium hirsutum HOM05D002627 ORTHO05D002823 5.1e-07 60.5 520 23.8
BcaC06g30916 Brassica carinata HOM05D002627 ORTHO05D002823 6.6e-07 60.1 109 37.6
AUR62021794 Chenopodium quinoa HOM05D002627 ORTHO05D002823 6.6e-07 60.1 681 24.2
Glyma.05G032400 Glycine max HOM05D002627 ORTHO05D002823 6.6e-07 60.1 616 24.0
vmacro19345 Vaccinium macrocarpon HOM05D002627 ORTHO05D002823 6.6e-07 60.1 89 38.2
Lalb_Chr13g0298031 Lupinus albus HOM05D002627 ORTHO05D002823 8.7e-07 59.7 643 23.3
Carub.0005s0693 Capsella rubella HOM05D002627 ORTHO05D002823 1.1e-06 59.3 245 29.8
Glyma.17G094200 Glycine max HOM05D002627 ORTHO05D002823 1.1e-06 59.3 601 23.0
Actinidia37686 Actinidia chinensis HOM05D002627 ORTHO05D002823 1.5e-06 58.9 94 35.1
CiPaw.11G034000 Carya illinoinensis HOM05D002627 ORTHO05D002823 1.5e-06 58.9 631 22.2
SGA_v2.0_scaffold25G10857 Striga asiatica HOM05D002627 ORTHO05D002823 1.5e-06 58.9 438 25.6
Thecc.03G001600 Theobroma cacao HOM05D002627 ORTHO05D002823 1.9e-06 58.5 425 27.3
Lalb_Chr12g0201291 Lupinus albus HOM05D002627 ORTHO05D002823 2.5e-06 58.2 618 21.4
MBI09_g46788_MAGBIO Magnolia biondii HOM05D002627 ORTHO05D002823 2.5e-06 58.2 94 39.4
Nitab4.5_0000003g0380 Nicotiana tabacum HOM05D002627 ORTHO05D002823 2.5e-06 58.2 209 27.8
vmacro16579 Vaccinium macrocarpon HOM05D002627 ORTHO05D002823 2.5e-06 58.2 84 40.5
CSS0010077 Camellia sinensis var. sinensis HOM05D002627 ORTHO05D002823 3.3e-06 57.8 89 38.2
Prupe.3G275400 Prunus persica HOM05D002627 ORTHO05D002823 4.3e-06 57.4 88 38.6
AUR62018328 Chenopodium quinoa HOM05D002627 ORTHO05D002823 5.6e-06 57.0 251 25.9
AUR62030558 Chenopodium quinoa HOM05D002627 ORTHO05D002823 7.3e-06 56.6 253 27.7
PGSC0003DMG400001402 Solanum tuberosum HOM05D002627 ORTHO05D002823 7.3e-06 56.6 80 45.0
AUR62008304 Chenopodium quinoa HOM05D002627 ORTHO05D002823 9.6e-06 56.2 631 23.3


User provided reference genes

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