Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0564600 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 8.0e-24 113.6 92 100.0
Zm00001eb182560 Zea mays HOM05D008314 ORTHO05D010369 1.0e-10 70.1 37 73.0
COL.COLO4_30857 Corchorus olitorius HOM05D008314 ORTHO05D010369 3.8e-10 68.2 36 75.0
Duzib235G1505 Durio zibethinus HOM05D008314 ORTHO05D010369 3.8e-10 68.2 36 75.0
Gohir.D06G149000 Gossypium hirsutum HOM05D008314 ORTHO05D010369 6.6e-10 67.4 35 77.1
Gorai.010G173500 Gossypium raimondii HOM05D008314 ORTHO05D010369 6.6e-10 67.4 35 77.1
SalBow6G0833 Salvia bowleyana HOM05D008314 ORTHO05D010369 1.1e-09 66.6 37 70.3
Thecc.03G325500 Theobroma cacao HOM05D008314 ORTHO05D010369 1.1e-09 66.6 36 72.2
Thecc.06G129300 Theobroma cacao HOM05D008314 ORTHO05D010369 1.1e-09 66.6 36 72.2
Nn6g35721 Nelumbo nucifera HOM05D008314 ORTHO05D010369 1.9e-09 65.9 37 70.3
Gohir.A06G143350 Gossypium hirsutum HOM05D008314 ORTHO05D010369 4.3e-09 64.7 35 74.3
FvH4_6g35740 Fragaria vesca HOM05D008314 ORTHO05D010369 7.3e-09 63.9 35 68.6
FAN05G1710 Fragaria x ananassa HOM05D008314 ORTHO05D010369 7.3e-09 63.9 35 68.6
FAN09G4263 Fragaria x ananassa HOM05D008314 ORTHO05D010369 7.3e-09 63.9 35 68.6
MBI13_g01687_MAGBIO Magnolia biondii HOM05D008314 ORTHO05D010369 9.5e-09 63.5 37 70.3
ATR0099G003 Amborella trichopoda HOM05D008314 ORTHO05D010369 1.6e-08 62.8 37 67.6
FAN02G2954 Fragaria x ananassa HOM05D008314 ORTHO05D010369 2.1e-08 62.4 35 65.7
Potri.003G072000 Populus trichocarpa HOM05D008314 ORTHO05D010369 2.1e-08 62.4 38 65.8
Cc04_g00790 Coffea canephora HOM05D008314 ORTHO05D010369 2.8e-08 62.0 35 65.7
Oeu008398.2 Olea europaea HOM05D008314 ORTHO05D010369 2.8e-08 62.0 36 66.7
RcHm_v2.0_Chr2g0147741 Rosa chinensis HOM05D008314 ORTHO05D010369 2.8e-08 62.0 35 65.7
Atru.chr1.4110 Acer truncatum HOM05D008314 ORTHO05D010369 3.6e-08 61.6 36 66.7
CSS0041009 Camellia sinensis var. sinensis HOM05D008314 ORTHO05D010369 3.6e-08 61.6 38 65.8
TAR070G0001 Trochodendron aralioides HOM05D008314 ORTHO05D010369 3.6e-08 61.6 37 62.2
Lalb_Chr17g0343301 Lupinus albus HOM05D008314 ORTHO05D010369 4.7e-08 61.2 35 65.7
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 4.7e-08 61.2 37 64.9
QL05p001376 Quercus lobata HOM05D008314 ORTHO05D010369 4.7e-08 61.2 36 63.9
PSO135G0082 Papaver somniferum HOM05D008314 ORTHO05D010369 8.0e-08 60.5 37 64.9
TWI14G0587 Tripterygium wilfordii HOM05D008314 ORTHO05D010369 8.0e-08 60.5 37 64.9
CiPaw.01G212000 Carya illinoinensis HOM05D008314 ORTHO05D010369 1.0e-07 60.1 36 66.7
Oeu059021.1 Olea europaea HOM05D008314 ORTHO05D010369 1.4e-07 59.7 36 61.1
Psat4g165800 Pisum sativum HOM05D008314 ORTHO05D010369 1.4e-07 59.7 35 65.7
Zm00001eb019440 Zea mays HOM05D008314 ORTHO05D010369 1.4e-07 59.7 30 73.3
Duzib160G0115 Durio zibethinus HOM05D008314 ORTHO05D010369 1.8e-07 59.3 35 62.9
Cpa.g.sc25.184 Carica papaya HOM05D008314 ORTHO05D010369 2.3e-07 58.9 38 57.9
AUR62001414 Chenopodium quinoa HOM05D008314 ORTHO05D010369 2.3e-07 58.9 36 63.9
Dinv37824 Davidia involucrata HOM05D008314 ORTHO05D010369 2.3e-07 58.9 36 63.9
Oeu059020.1 Olea europaea HOM05D008314 ORTHO05D010369 2.3e-07 58.9 36 63.9
Prupe.3G031600 Prunus persica HOM05D008314 ORTHO05D010369 2.3e-07 58.9 36 63.9
Actinidia24433 Actinidia chinensis HOM05D008314 ORTHO05D010369 3.0e-07 58.5 36 63.9
Glyma.16G013200 Glycine max HOM05D008314 ORTHO05D010369 3.0e-07 58.5 37 62.2
Rhsim12G0213100 Rhododendron simsii HOM05D008314 ORTHO05D010369 3.0e-07 58.5 36 58.3
AUR62025623 Chenopodium quinoa HOM05D008314 ORTHO05D010369 5.2e-07 57.8 36 61.1
Manes.11G013300 Manihot esculenta HOM05D008314 ORTHO05D010369 6.8e-07 57.4 37 56.8
Os03g0400700 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 6.8e-07 57.4 36 61.1
arahy.Tifrunner.gnm1.ann1.0KI29H Arachis hypogaea HOM05D008314 ORTHO05D010369 8.9e-07 57.0 36 66.7
Ciclev10027008m.g Citrus clementina HOM05D008314 ORTHO05D010369 8.9e-07 57.0 37 59.5
Phvul.010G123800 Phaseolus vulgaris HOM05D008314 ORTHO05D010369 8.9e-07 57.0 35 62.9
Sed0005090 Sechium edule HOM05D008314 ORTHO05D010369 8.9e-07 57.0 32 65.6
arahy.Tifrunner.gnm1.ann1.K03VIU Arachis hypogaea HOM05D008314 ORTHO05D010369 2.0e-06 55.8 36 63.9
Medtr8g022990 Medicago truncatula HOM05D008314 ORTHO05D010369 2.0e-06 55.8 36 63.9
MD09G1173500 Malus domestica HOM05D008314 ORTHO05D010369 2.6e-06 55.5 37 59.5
Ciclev10026853m.g Citrus clementina HOM05D008314 ORTHO05D010369 3.4e-06 55.1 35 60.0
MELO3C024311.2 Cucumis melo HOM05D008314 ORTHO05D010369 4.4e-06 54.7 35 54.3
CsaV3_7G033990 Cucumis sativus L. HOM05D008314 ORTHO05D010369 7.5e-06 53.9 35 54.3
Duzib160G0571 Durio zibethinus HOM05D008314 ORTHO05D010369 9.8e-06 53.5 36 58.3
SEGI_28829 Sequoiadendron giganteum HOM05D008314 ORTHO05D010369 9.8e-06 53.5 34 58.8


User provided reference genes

Program Settings