Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 2.8e-45 184.9 90 100.0
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.2e-34 148.7 83 80.7
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 4.9e-34 147.5 83 80.7
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 8.3e-34 146.7 78 87.2
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.1e-33 146.4 80 82.5
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.1e-33 146.4 84 83.3
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.4e-33 146.0 83 80.7
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.4e-33 146.0 81 84.0
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 1.4e-33 146.0 81 84.0
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.9e-33 145.6 83 81.9
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 1.9e-33 145.6 82 80.5
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.9e-33 145.6 83 81.9
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.9e-33 145.6 77 87.0
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 2.4e-33 145.2 80 83.8
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 3.2e-33 144.8 82 81.7
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 4.1e-33 144.4 78 84.6
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.1e-33 144.4 80 81.2
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 4.1e-33 144.4 80 82.5
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 7.0e-33 143.7 81 81.5
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.0e-33 143.7 80 82.5
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.0e-33 143.7 80 82.5
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 9.2e-33 143.3 83 81.9
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 9.2e-33 143.3 83 81.9
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.2e-33 143.3 80 81.2
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 9.2e-33 143.3 80 82.5
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.2e-32 142.9 80 81.2
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 1.6e-32 142.5 83 80.7
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 2.1e-32 142.1 95 73.7
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 2.1e-32 142.1 82 82.9
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 2.1e-32 142.1 78 84.6
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 2.1e-32 142.1 77 84.4
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.7e-32 141.7 82 78.0
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-32 141.7 80 81.2
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 2.7e-32 141.7 80 82.5
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.5e-32 141.4 82 79.3
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.5e-32 141.4 82 76.8
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 4.6e-32 141.0 82 79.3
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 4.6e-32 141.0 78 83.3
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 6.0e-32 140.6 83 78.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 6.0e-32 140.6 83 78.3
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 7.8e-32 140.2 82 78.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 7.8e-32 140.2 82 78.0
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 1.3e-31 139.4 82 78.0
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 1.7e-31 139.0 78 80.8
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 2.3e-31 138.7 78 79.5
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 2.3e-31 138.7 81 80.2
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 2.3e-31 138.7 82 78.0
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 2.3e-31 138.7 77 84.4
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 3.0e-31 138.3 82 76.8
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 3.0e-31 138.3 82 75.6
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.9e-31 137.9 77 80.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 3.9e-31 137.9 78 79.5
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.9e-31 137.9 80 75.0
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 3.9e-31 137.9 79 79.7
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 5.1e-31 137.5 83 78.3
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 5.1e-31 137.5 78 78.2
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 5.1e-31 137.5 78 78.2
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 5.1e-31 137.5 78 78.2
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 6.6e-31 137.1 79 81.0
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 6.6e-31 137.1 72 93.1
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 8.6e-31 136.7 80 76.2
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.1e-30 136.3 82 75.6
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.1e-30 136.3 80 76.2
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.5e-30 136.0 78 79.5
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.9e-30 135.6 82 75.6
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 1.9e-30 135.6 83 74.7
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 2.5e-30 135.2 80 77.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 5.6e-30 134.0 83 75.9
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 5.6e-30 134.0 77 79.2
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 9.5e-30 133.3 77 79.2
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-29 132.9 80 78.8
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.2e-29 132.9 80 78.8
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 1.6e-29 132.5 78 74.4
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.6e-29 132.5 80 77.5
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 2.1e-29 132.1 79 73.4
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.1e-29 132.1 80 77.5
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 2.1e-29 132.1 80 77.5
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.8e-29 131.7 75 78.7
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 4.7e-29 131.0 79 72.2
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 8.1e-29 130.2 78 76.9
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 8.1e-29 130.2 82 74.4
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 1.4e-28 129.4 80 76.2
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.4e-28 129.4 80 76.2
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 1.4e-28 129.4 80 76.2
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-28 128.6 92 67.4
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 4.0e-28 127.9 80 75.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 4.0e-28 127.9 80 75.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 4.0e-28 127.9 80 75.0
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 5.2e-28 127.5 80 75.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 6.8e-28 127.1 76 75.0
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 8.9e-28 126.7 78 73.1
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.6e-27 125.2 80 73.8
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.6e-27 125.2 80 73.8
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.6e-27 125.2 80 73.8
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 3.4e-27 124.8 75 74.7
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 3.4e-27 124.8 75 74.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 9.9e-27 123.2 94 64.9
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.9e-27 123.2 80 73.8
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.7e-26 122.5 68 83.8
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-26 122.5 58 93.1
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.4e-25 118.6 113 53.1
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.1e-25 117.1 69 78.3
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 2.1e-24 115.5 66 83.3
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 7.8e-24 113.6 66 78.8
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.3e-23 112.1 73 69.9
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.1e-23 110.9 69 73.9
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.1e-23 110.9 71 76.1
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 5.1e-23 110.9 70 77.1
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 6.6e-23 110.5 71 74.6
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 6.6e-23 110.5 61 83.6
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.1e-22 109.8 66 75.8
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 2.5e-22 108.6 70 70.0
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 7.3e-22 107.1 64 76.6
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.6e-21 105.9 71 67.6
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 6.2e-21 104.0 50 84.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 4.0e-20 101.3 73 68.5
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 4.0e-20 101.3 66 71.2
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.5e-19 99.4 68 67.6
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 3.4e-19 98.2 57 77.2
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 3.4e-19 98.2 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 7.6e-19 97.1 77 57.1
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 7.6e-19 97.1 66 71.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 9.9e-19 96.7 51 80.4
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 4.9e-18 94.4 64 67.2
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.4e-17 92.8 49 79.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.4e-17 92.8 49 79.6
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 3.2e-17 91.7 74 60.8
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 6.6e-15 84.0 66 62.1
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 1.1e-14 83.2 50 78.0
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 6.9e-12 73.9 35 88.6
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.3e-10 69.7 37 75.7
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.2e-10 68.9 59 59.3
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.2e-09 65.1 38 71.1
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.1e-08 62.4 39 76.9
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 1.0e-07 60.1 70 37.1
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 3.9e-07 58.2 39 59.0
Cre16.g682587 Chlamydomonas reinhardtii HOM05D005881 ORTHO05D007298 4.3e-06 54.7 75 37.3


User provided reference genes

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