Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 5.2e-50 201.1 127 100.0
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 8.2e-27 124.0 77 80.5
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 4.0e-26 121.7 77 79.2
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.7e-24 116.3 77 75.3
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 6.5e-24 114.4 77 74.0
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 8.4e-24 114.0 77 75.3
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 1.9e-23 112.8 77 74.0
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 3.2e-23 112.1 77 72.7
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 4.2e-23 111.7 77 72.7
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 4.2e-23 111.7 78 74.4
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 7.1e-23 110.9 77 72.7
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 9.3e-23 110.5 77 72.7
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 1.2e-22 110.2 77 71.4
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 1.6e-22 109.8 77 72.7
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.6e-22 109.8 77 72.7
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.6e-22 109.8 77 72.7
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 1.6e-22 109.8 77 71.4
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 2.7e-22 109.0 77 67.5
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 2.7e-22 109.0 77 67.5
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 2.7e-22 109.0 77 71.4
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.5e-22 108.6 77 71.4
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 6.0e-22 107.8 77 72.7
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.0e-21 107.1 77 70.1
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 1.0e-21 107.1 77 70.1
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 1.3e-21 106.7 77 70.1
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 1.8e-21 106.3 77 68.8
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 2.3e-21 105.9 77 70.1
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 2.3e-21 105.9 77 70.1
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 3.0e-21 105.5 77 70.1
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 3.0e-21 105.5 77 67.5
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 3.0e-21 105.5 77 66.2
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 3.9e-21 105.1 77 70.1
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 3.9e-21 105.1 77 67.5
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 5.1e-21 104.8 77 68.8
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 5.1e-21 104.8 77 67.5
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 5.1e-21 104.8 78 70.5
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 5.1e-21 104.8 76 69.7
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 6.7e-21 104.4 77 68.8
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 6.7e-21 104.4 77 70.1
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 8.7e-21 104.0 77 68.8
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 8.7e-21 104.0 77 70.1
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 8.7e-21 104.0 76 69.7
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 8.7e-21 104.0 77 68.8
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 8.7e-21 104.0 77 64.9
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 8.7e-21 104.0 77 68.8
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 8.7e-21 104.0 77 68.8
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 1.1e-20 103.6 77 68.8
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 1.1e-20 103.6 76 68.4
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 1.5e-20 103.2 77 64.9
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 1.5e-20 103.2 77 66.2
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 1.5e-20 103.2 77 67.5
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 1.5e-20 103.2 77 67.5
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 1.9e-20 102.8 77 67.5
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.9e-20 102.8 77 66.2
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.9e-20 102.8 77 66.2
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 1.9e-20 102.8 77 66.2
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 1.9e-20 102.8 77 70.1
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 1.9e-20 102.8 77 67.5
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 3.3e-20 102.1 77 67.5
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 3.3e-20 102.1 77 67.5
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 3.3e-20 102.1 77 67.5
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 3.3e-20 102.1 76 63.2
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 4.3e-20 101.7 77 66.2
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 4.3e-20 101.7 77 64.9
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 5.7e-20 101.3 75 66.7
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 5.7e-20 101.3 77 66.2
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 7.4e-20 100.9 77 67.5
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 7.4e-20 100.9 77 66.2
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 9.7e-20 100.5 77 63.6
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 1.3e-19 100.1 77 66.2
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 1.3e-19 100.1 77 67.5
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 1.6e-19 99.8 77 66.2
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 2.8e-19 99.0 77 66.2
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 2.8e-19 99.0 77 64.9
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 3.7e-19 98.6 74 64.9
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 8.2e-19 97.4 77 64.9
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.1e-18 97.1 77 63.6
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 1.1e-18 97.1 76 64.5
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 1.4e-18 96.7 77 63.6
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 1.4e-18 96.7 77 61.0
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 2.4e-18 95.9 77 63.6
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 2.4e-18 95.9 74 63.5
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 5.3e-18 94.7 77 62.3
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 5.3e-18 94.7 77 63.6
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 2.6e-17 92.4 74 62.2
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 4.5e-17 91.7 76 57.9
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 5.9e-17 91.3 77 59.7
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 1.3e-16 90.1 77 58.4
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 1.3e-16 90.1 77 58.4
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 1.7e-16 89.7 77 57.1
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 1.7e-16 89.7 77 58.4
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 1.7e-16 89.7 77 58.4
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 2.9e-16 89.0 77 58.4
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 2.9e-16 89.0 77 57.1
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 5.0e-16 88.2 77 55.8
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 5.0e-16 88.2 77 55.8
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 5.0e-16 88.2 77 55.8
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 5.0e-16 88.2 77 55.8
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 5.0e-16 88.2 77 55.8
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 5.0e-16 88.2 77 57.1
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 8.5e-16 87.4 62 71.0
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 3.2e-15 85.5 77 55.8
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 7.2e-15 84.3 77 50.6
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.2e-14 83.6 77 50.6
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 1.2e-14 83.6 63 65.1
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 2.1e-14 82.8 77 53.2
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 1.0e-13 80.5 77 49.4
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.8e-13 79.7 77 54.5
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 1.8e-13 79.7 77 51.9
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 7.4e-12 74.3 79 48.1
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 4.1e-10 68.6 79 50.6
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 3.2e-07 58.9 63 47.6
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 3.2e-07 58.9 77 37.7
PRCOL_00000441 Prasinoderma coloniale HOM05D000415 ORTHO05D002017 6.1e-06 54.7 85 43.5


User provided reference genes

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