Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 7.7e-98 360.5 190 100.0
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 7.9e-26 121.3 134 56.7
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 5.7e-16 88.6 65 58.5
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 7.4e-16 88.2 156 37.8
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 9.7e-16 87.8 139 38.8
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 1.3e-15 87.4 59 61.0
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 2.2e-15 86.7 138 41.3
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 2.2e-15 86.7 140 40.0
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 2.8e-15 86.3 137 38.7
Os04g0413100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 2.8e-15 86.3 58 72.4
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 3.7e-15 85.9 72 52.8
Zm00001eb083800 Zea mays HOM05D004622 ORTHO05D005431 4.8e-15 85.5 58 70.7
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 6.3e-15 85.1 140 39.3
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 6.3e-15 85.1 62 56.5
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 1.1e-14 84.3 65 55.4
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.1e-14 84.3 153 35.9
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 1.1e-14 84.3 64 53.1
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.4e-14 84.0 135 39.3
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.8e-14 83.6 139 37.4
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 1.8e-14 83.6 136 38.2
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.8e-14 83.6 140 40.0
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 2.4e-14 83.2 140 37.1
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 2.4e-14 83.2 54 66.7
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 4.1e-14 82.4 152 36.2
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 4.1e-14 82.4 134 36.6
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 4.1e-14 82.4 140 37.9
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 4.1e-14 82.4 139 36.7
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 5.3e-14 82.0 138 39.9
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 5.3e-14 82.0 135 37.0
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 5.3e-14 82.0 152 38.2
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 6.9e-14 81.6 62 58.1
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 6.9e-14 81.6 59 61.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 9.1e-14 81.3 143 39.2
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 9.1e-14 81.3 136 34.6
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 9.1e-14 81.3 63 52.4
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 9.1e-14 81.3 135 35.6
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.2e-13 80.9 136 34.6
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.2e-13 80.9 138 36.2
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.2e-13 80.9 139 37.4
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 1.5e-13 80.5 64 51.6
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 1.5e-13 80.5 133 36.1
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.0e-13 80.1 65 56.9
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.0e-13 80.1 65 56.9
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 2.0e-13 80.1 65 56.9
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 2.6e-13 79.7 145 40.7
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 2.6e-13 79.7 64 54.7
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 3.4e-13 79.3 146 37.0
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 3.4e-13 79.3 63 50.8
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 5.9e-13 78.6 74 43.2
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 5.9e-13 78.6 150 34.7
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 7.7e-13 78.2 66 45.5
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 7.7e-13 78.2 167 32.9
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 7.7e-13 78.2 66 50.0
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 1.0e-12 77.8 146 34.2
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.0e-12 77.8 69 52.2
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 1.0e-12 77.8 134 41.0
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 1.3e-12 77.4 137 38.7
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 1.3e-12 77.4 145 39.3
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 1.3e-12 77.4 148 37.2
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 1.3e-12 77.4 62 54.8
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 1.7e-12 77.0 61 50.8
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 1.7e-12 77.0 145 40.0
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.7e-12 77.0 135 38.5
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 2.2e-12 76.6 139 36.7
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 2.9e-12 76.3 59 52.5
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 3.8e-12 75.9 65 50.8
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 3.8e-12 75.9 135 39.3
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 5.0e-12 75.5 54 61.1
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 5.0e-12 75.5 144 36.8
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.0e-12 75.5 59 52.5
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 5.0e-12 75.5 61 55.7
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 5.0e-12 75.5 61 55.7
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 6.5e-12 75.1 80 46.2
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 6.5e-12 75.1 146 37.0
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 8.5e-12 74.7 143 37.1
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 8.5e-12 74.7 147 35.4
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 1.1e-11 74.3 138 34.8
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.1e-11 74.3 154 34.4
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.1e-11 74.3 64 51.6
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.1e-11 74.3 81 42.0
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.1e-11 74.3 147 32.7
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 1.4e-11 73.9 65 52.3
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.4e-11 73.9 153 35.3
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 1.4e-11 73.9 58 56.9
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.4e-11 73.9 135 36.3
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 1.4e-11 73.9 135 36.3
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.4e-11 73.9 62 50.0
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.9e-11 73.6 139 33.8
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 1.9e-11 73.6 63 49.2
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 1.9e-11 73.6 148 33.8
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.9e-11 73.6 146 35.6
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.9e-11 73.6 135 32.6
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.9e-11 73.6 139 38.1
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.2e-11 72.8 157 35.0
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.2e-11 72.8 157 35.0
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 4.2e-11 72.4 157 34.4
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 5.5e-11 72.0 137 34.3
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 7.2e-11 71.6 139 35.3
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.6e-10 70.5 138 36.2
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 2.1e-10 70.1 133 39.1
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.1e-10 68.6 164 32.3
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 7.9e-10 68.2 143 37.1
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 1.0e-09 67.8 61 50.8
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.0e-09 67.8 61 50.8
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 1.4e-09 67.4 145 40.7
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.8e-09 67.0 140 35.0
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 2.3e-09 66.6 150 34.7
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 2.3e-09 66.6 139 35.3
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 3.9e-09 65.9 137 35.0
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 3.9e-09 65.9 80 41.2
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 5.1e-09 65.5 143 33.6
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.7e-09 65.1 75 46.7
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 6.7e-09 65.1 130 38.5
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 8.8e-09 64.7 61 49.2
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 8.8e-09 64.7 58 53.4
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 1.1e-08 64.3 138 33.3
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.6e-08 63.2 62 50.0
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 3.3e-08 62.8 55 54.5
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 4.4e-08 62.4 62 50.0
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-08 62.4 62 50.0
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-08 62.4 62 50.0
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-08 62.4 62 50.0
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-08 62.4 62 50.0
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-08 62.4 62 50.0
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 5.7e-08 62.0 65 44.6
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 5.7e-08 62.0 40 65.0
ATR0665G217 Amborella trichopoda HOM05D001105 ORTHO05D003643 7.4e-08 61.6 156 31.4
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 9.7e-08 61.2 65 46.2
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 9.7e-08 61.2 58 48.3
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 9.7e-08 61.2 56 53.6
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 1.7e-07 60.5 62 45.2
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 1.7e-07 60.5 59 45.8
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 1.7e-07 60.5 79 40.5
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 1.7e-07 60.5 61 45.9
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 2.2e-07 60.1 57 49.1
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 2.8e-07 59.7 53 52.8
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 2.8e-07 59.7 159 30.2
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 2.8e-07 59.7 57 49.1
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 2.8e-07 59.7 59 50.8
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 2.8e-07 59.7 58 50.0
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 2.8e-07 59.7 61 45.9
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 3.7e-07 59.3 50 56.0
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 3.7e-07 59.3 79 43.0
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 3.7e-07 59.3 83 34.9
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 3.7e-07 59.3 130 41.5
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 3.7e-07 59.3 59 50.8
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 3.7e-07 59.3 58 46.6
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 3.7e-07 59.3 59 50.8
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 4.8e-07 58.9 58 50.0
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 4.8e-07 58.9 65 44.6
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.8e-07 58.9 65 43.1
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 4.8e-07 58.9 65 43.1
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 6.3e-07 58.5 63 49.2
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 6.3e-07 58.5 84 35.7
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 1.1e-06 57.8 58 48.3
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 1.1e-06 57.8 131 36.6
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 1.1e-06 57.8 64 43.8
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 1.1e-06 57.8 59 47.5
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 1.4e-06 57.4 53 52.8
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 1.4e-06 57.4 64 46.9
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 1.4e-06 57.4 160 32.5
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 1.8e-06 57.0 58 48.3
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 1.8e-06 57.0 79 39.2
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 2.4e-06 56.6 136 30.1
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 3.1e-06 56.2 58 44.8
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 3.1e-06 56.2 59 45.8
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 3.1e-06 56.2 130 34.6
Peaxi162Scf00345g00065 Petunia axillaris HOM05D001105 ORTHO05D003643 4.1e-06 55.8 167 27.5
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 5.3e-06 55.5 59 47.5
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 5.3e-06 55.5 57 45.6
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 7.0e-06 55.1 53 47.2
MBI03_g11328_MAGBIO Magnolia biondii HOM05D001105 ORTHO05D003643 7.0e-06 55.1 148 30.4
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 7.0e-06 55.1 63 41.3
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 9.1e-06 54.7 52 50.0
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 9.1e-06 54.7 63 42.9


User provided reference genes

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