Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 2.7e-91 339.0 212 100.0
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 5.3e-39 165.2 202 50.5
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 4.4e-33 145.6 206 49.0
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.5e-20 103.2 222 37.4
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 7.5e-17 91.7 159 35.8
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 2.8e-16 89.7 169 34.9
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 3.7e-16 89.4 159 35.2
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 6.3e-16 88.6 134 37.3
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 6.3e-16 88.6 134 39.6
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 8.3e-16 88.2 162 35.8
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 1.1e-15 87.8 130 36.9
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 1.1e-15 87.8 170 35.9
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 5.4e-15 85.5 123 39.0
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 7.0e-15 85.1 172 33.1
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 3.5e-14 82.8 205 29.3
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 5.9e-14 82.0 197 29.4
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 7.7e-14 81.6 182 31.3
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.7e-13 80.5 168 42.9
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 2.3e-13 80.1 96 45.8
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.3e-13 80.1 202 30.2
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 6.6e-13 78.6 158 32.9
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.6e-13 78.6 160 34.4
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 8.6e-13 78.2 203 31.0
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 1.1e-12 77.8 155 31.6
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 1.5e-12 77.4 144 34.0
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.9e-12 77.0 142 32.4
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 2.5e-12 76.6 93 39.8
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 3.3e-12 76.3 61 57.4
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 4.3e-12 75.9 139 34.5
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 4.3e-12 75.9 115 34.8
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 4.3e-12 75.9 124 33.1
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 5.6e-12 75.5 202 32.2
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 5.6e-12 75.5 182 29.1
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 5.6e-12 75.5 105 34.3
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 7.3e-12 75.1 160 33.8
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 1.2e-11 74.3 96 39.6
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 1.2e-11 74.3 111 38.7
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.2e-11 74.3 195 30.8
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.6e-11 73.9 161 31.1
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.6e-11 73.9 150 34.7
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.1e-11 73.6 194 29.4
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.8e-11 73.2 120 37.5
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 4.7e-11 72.4 91 38.5
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 6.1e-11 72.0 124 33.9
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 6.1e-11 72.0 120 35.0
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 1.0e-10 71.2 173 30.1
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.4e-10 70.9 147 32.0
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-10 70.9 182 30.8
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.8e-10 70.5 167 30.5
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 2.3e-10 70.1 153 47.7
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.0e-10 69.7 159 29.6
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.0e-10 69.7 182 30.8
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.0e-10 69.7 159 28.9
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 3.0e-10 69.7 109 34.9
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 4.0e-10 69.3 149 31.5
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 5.2e-10 68.9 113 31.0
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 5.2e-10 68.9 189 25.9
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 5.2e-10 68.9 91 37.4
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 6.8e-10 68.6 66 43.9
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 6.8e-10 68.6 101 37.6
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 6.8e-10 68.6 160 28.8
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 8.9e-10 68.2 104 34.6
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 8.9e-10 68.2 104 34.6
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 8.9e-10 68.2 119 37.8
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 8.9e-10 68.2 169 31.4
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 1.2e-09 67.8 113 34.5
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.2e-09 67.8 182 30.2
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 1.2e-09 67.8 154 31.8
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.5e-09 67.4 150 28.0
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 1.5e-09 67.4 72 40.3
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 2.0e-09 67.0 72 37.5
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 2.0e-09 67.0 72 40.3
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 2.6e-09 66.6 104 34.6
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 2.6e-09 66.6 106 34.9
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 3.4e-09 66.2 72 37.5
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.4e-09 66.2 131 32.1
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 4.4e-09 65.9 72 37.5
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 4.4e-09 65.9 102 34.3
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 4.4e-09 65.9 166 28.9
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 5.7e-09 65.5 99 35.4
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 5.7e-09 65.5 119 37.8
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 7.5e-09 65.1 102 34.3
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 7.5e-09 65.1 152 28.9
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 9.8e-09 64.7 72 37.5
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 9.8e-09 64.7 162 29.6
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 9.8e-09 64.7 94 29.8
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.3e-08 64.3 124 33.9
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 1.7e-08 63.9 144 29.9
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.9e-08 63.2 65 40.0
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 2.9e-08 63.2 152 29.6
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.9e-08 63.2 82 43.9
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 3.7e-08 62.8 64 40.6
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 3.7e-08 62.8 99 35.4
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 3.7e-08 62.8 105 32.4
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 4.9e-08 62.4 77 35.1
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.9e-08 62.4 100 37.0
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 4.9e-08 62.4 172 27.3
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 6.4e-08 62.0 108 32.4
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 6.4e-08 62.0 187 28.9
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 8.3e-08 61.6 125 32.0
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 1.1e-07 61.2 197 30.5
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.4e-07 60.8 64 39.1
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 2.4e-07 60.1 167 28.7
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 5.4e-07 58.9 116 31.9
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 7.0e-07 58.5 62 41.9
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 9.2e-07 58.2 107 32.7
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 9.2e-07 58.2 100 37.0
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.2e-06 57.8 65 41.5
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.2e-06 57.8 65 41.5
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 2.0e-06 57.0 59 39.0
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 4.6e-06 55.8 97 35.1


User provided reference genes

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