Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 8.5e-130 467.2 276 100.0
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 2.9e-69 266.2 158 96.2
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 1.8e-39 167.2 150 62.7
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 7.2e-36 155.2 150 59.3
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 8.8e-34 148.3 130 62.3
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 1.7e-32 144.1 156 51.3
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 2.2e-32 143.7 126 62.7
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 6.3e-32 142.1 135 58.5
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 8.2e-32 141.7 142 54.9
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 8.2e-32 141.7 145 59.3
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 1.4e-31 141.0 152 55.9
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 1.8e-31 140.6 152 53.9
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 3.1e-31 139.8 149 53.0
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 4.1e-31 139.4 143 57.3
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 5.3e-31 139.0 128 60.2
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 5.3e-31 139.0 134 56.0
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 9.1e-31 138.3 138 58.0
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 9.1e-31 138.3 157 53.5
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 2.0e-30 137.1 143 55.9
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 2.0e-30 137.1 139 55.4
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 2.0e-30 137.1 149 53.7
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 2.6e-30 136.7 151 54.3
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 2.6e-30 136.7 136 55.1
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.6e-30 136.7 130 58.5
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.6e-30 136.7 130 58.5
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 2.6e-30 136.7 129 60.5
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 2.6e-30 136.7 148 54.1
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 3.5e-30 136.3 128 59.4
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 3.5e-30 136.3 130 58.5
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 4.5e-30 136.0 137 53.3
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 1.7e-29 134.0 111 64.9
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 2.9e-29 133.3 137 55.5
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 2.9e-29 133.3 128 57.8
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 3.8e-29 132.9 129 58.9
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 6.5e-29 132.1 128 59.4
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 6.5e-29 132.1 128 55.5
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 6.5e-29 132.1 133 54.9
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 6.5e-29 132.1 143 53.1
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 6.5e-29 132.1 130 56.2
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 6.5e-29 132.1 121 60.3
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 8.5e-29 131.7 136 53.7
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 8.5e-29 131.7 134 54.5
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 1.1e-28 131.3 127 55.9
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 1.1e-28 131.3 151 49.7
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 1.1e-28 131.3 128 57.8
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 1.4e-28 131.0 151 50.3
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 1.4e-28 131.0 145 55.2
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.4e-28 131.0 147 54.4
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 1.4e-28 131.0 147 54.4
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 1.4e-28 131.0 174 44.8
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 1.9e-28 130.6 142 52.1
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 1.9e-28 130.6 152 52.0
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 2.5e-28 130.2 152 52.0
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 2.5e-28 130.2 161 48.4
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 2.5e-28 130.2 145 51.7
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 3.2e-28 129.8 149 52.3
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 3.2e-28 129.8 130 56.2
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 4.2e-28 129.4 135 54.1
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 5.5e-28 129.0 150 50.0
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 5.5e-28 129.0 141 55.3
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 5.5e-28 129.0 146 52.1
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 5.5e-28 129.0 130 53.8
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 7.2e-28 128.6 147 51.7
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 9.4e-28 128.3 116 59.5
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 9.4e-28 128.3 142 49.3
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 9.4e-28 128.3 130 56.2
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 1.2e-27 127.9 142 50.0
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 2.7e-27 126.7 152 50.0
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 2.7e-27 126.7 127 54.3
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 3.6e-27 126.3 127 54.3
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 6.1e-27 125.6 113 58.4
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 6.1e-27 125.6 142 50.7
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 6.1e-27 125.6 128 53.9
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 8.0e-27 125.2 155 49.0
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 8.0e-27 125.2 127 54.3
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.0e-26 124.8 143 51.0
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.4e-26 124.4 148 50.7
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 1.4e-26 124.4 121 57.9
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.4e-26 124.4 153 50.3
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 2.3e-26 123.6 148 49.3
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 2.3e-26 123.6 146 50.7
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 6.7e-26 122.1 146 50.0
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 6.7e-26 122.1 146 50.0
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 6.7e-26 122.1 140 52.1
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 6.7e-26 122.1 151 47.7
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 6.7e-26 122.1 147 50.3
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 8.8e-26 121.7 146 49.3
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 1.1e-25 121.3 135 50.4
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 1.1e-25 121.3 148 50.0
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 1.1e-25 121.3 143 50.3
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 1.5e-25 120.9 153 46.4
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 2.0e-25 120.6 148 49.3
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 2.0e-25 120.6 146 49.3
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 3.3e-25 119.8 135 48.9
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 4.4e-25 119.4 134 54.5
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 5.7e-25 119.0 135 48.9
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 5.7e-25 119.0 135 48.9
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.7e-24 117.5 122 53.3
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 2.2e-24 117.1 108 59.3
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 2.8e-24 116.7 121 54.5
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 3.7e-24 116.3 140 48.6
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 8.2e-24 115.2 137 50.4
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 1.4e-23 114.4 139 48.2
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 1.8e-23 114.0 137 47.4
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 1.8e-23 114.0 137 47.4
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 7.0e-23 112.1 154 46.1
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 7.7e-22 108.6 148 45.9
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 3.8e-21 106.3 165 43.0
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 3.2e-20 103.2 166 39.8
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 5.5e-20 102.4 188 40.4
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 5.5e-20 102.4 148 44.6
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 9.4e-20 101.7 148 43.9
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 1.2e-19 101.3 113 52.2
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 4.7e-19 99.4 76 68.4
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 1.7e-16 90.9 126 42.9
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 2.2e-16 90.5 76 64.5
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 9.1e-15 85.1 116 46.6
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 3.8e-13 79.7 72 62.5
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 8.0e-11 72.0 107 47.7
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 8.8e-10 68.6 67 53.7
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 2.8e-08 63.5 122 34.4
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 2.8e-08 63.5 122 34.4


User provided reference genes

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