Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0468500 Oryza sativa ssp. japonica HOM05D007660 ORTHO05D009442 1.6e-145 520.4 298 100.0
Zm00001eb279250 Zea mays HOM05D007660 ORTHO05D009442 2.5e-87 327.0 289 68.2
Aqoxy6G01459 Aquilegia oxysepala HOM05D007660 ORTHO05D009442 3.6e-33 147.1 263 35.7
A02p04930 Brassica napus HOM05D007660 ORTHO05D009442 5.7e-31 139.8 262 37.4
BcaB05g23329 Brassica carinata HOM05D007660 ORTHO05D009442 1.1e-29 135.6 262 36.6
BraA02t05452Z Brassica rapa HOM05D007660 ORTHO05D009442 1.4e-29 135.2 268 36.2
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 2.0e-28 131.3 261 35.6
Aa31LG11G11130 Aethionema arabicum HOM05D007660 ORTHO05D009442 2.7e-28 131.0 256 34.8
BcaC03g13602 Brassica carinata HOM05D007660 ORTHO05D009442 5.9e-28 129.8 256 36.7
BolC2t06898H Brassica oleracea HOM05D007660 ORTHO05D009442 5.9e-28 129.8 256 36.7
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 1.3e-27 128.6 256 35.9
Sp6g25850 Schrenkiella parvula HOM05D007660 ORTHO05D009442 1.1e-26 125.6 256 34.0
AL6G29730 Arabidopsis lyrata HOM05D007660 ORTHO05D009442 1.9e-26 124.8 257 34.6
CARHR194540 Cardamine hirsuta HOM05D007660 ORTHO05D009442 1.2e-25 122.1 256 34.8
AT5G18475 Arabidopsis thaliana HOM05D007660 ORTHO05D009442 2.1e-25 121.3 256 33.6
Nn5g29930 Nelumbo nucifera HOM05D007660 ORTHO05D009442 6.8e-24 116.3 219 36.1
SHI48801 Sapria himalayana HOM05D007660 ORTHO05D009442 5.7e-23 113.2 256 40.2
SHI48939 Sapria himalayana HOM05D007660 ORTHO05D009442 5.7e-23 113.2 256 40.2
Haze_22339 Corylus avellana HOM05D007660 ORTHO05D009442 3.7e-22 110.5 244 35.7
TAR376G0278 Trochodendron aralioides HOM05D007660 ORTHO05D009442 3.7e-22 110.5 218 34.9
CSS0016503 Camellia sinensis var. sinensis HOM05D007660 ORTHO05D009442 6.4e-22 109.8 220 34.1
Cfa013697 Carpinus fangiana HOM05D007660 ORTHO05D009442 4.6e-20 103.6 243 34.2
Rhsim06G0073800 Rhododendron simsii HOM05D007660 ORTHO05D009442 5.9e-20 103.2 217 34.6
Actinidia30813 Actinidia chinensis HOM05D007660 ORTHO05D009442 7.8e-20 102.8 217 34.1
Cc10_g15650 Coffea canephora HOM05D007660 ORTHO05D009442 1.0e-19 102.4 238 32.4
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.7e-19 101.7 249 29.3
CANSAT80G0706 Cannabis sativa HOM05D007660 ORTHO05D009442 5.0e-19 100.1 221 33.9
Thecc.09G257500 Theobroma cacao HOM05D007660 ORTHO05D009442 5.0e-19 100.1 222 34.7
Atru.chr13.1043 Acer truncatum HOM05D007660 ORTHO05D009442 6.6e-19 99.8 220 34.5
FAN13G3224 Fragaria x ananassa HOM05D007660 ORTHO05D009442 6.6e-19 99.8 244 33.6
AUR62020133 Chenopodium quinoa HOM05D007660 ORTHO05D009442 8.6e-19 99.4 219 36.1
Duzib168G2083 Durio zibethinus HOM05D007660 ORTHO05D009442 8.6e-19 99.4 220 32.3
COL.COLO4_24918 Corchorus olitorius HOM05D007660 ORTHO05D009442 1.9e-18 98.2 216 32.9
Thhalv10001849m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 3.3e-18 97.4 217 33.2
Lj3P942T62 Lonicera japonica HOM05D007660 ORTHO05D009442 3.3e-18 97.4 217 33.6
Gorai.001G131400 Gossypium raimondii HOM05D007660 ORTHO05D009442 4.3e-18 97.1 216 33.8
Nitab4.5_0001507g0030 Nicotiana tabacum HOM05D007660 ORTHO05D009442 4.3e-18 97.1 211 32.7
Migut.B01252 Erythranthe guttata HOM05D007660 ORTHO05D009442 7.3e-18 96.3 220 34.1
Sc23g0000600 Simmondsia chinensis HOM05D007660 ORTHO05D009442 7.3e-18 96.3 227 32.2
Manes.03G106200 Manihot esculenta HOM05D007660 ORTHO05D009442 1.2e-17 95.5 213 31.9
Nitab4.5_0013728g0010 Nicotiana tabacum HOM05D007660 ORTHO05D009442 1.6e-17 95.1 211 32.2
Solyc04g076070.1 Solanum lycopersicum HOM05D007660 ORTHO05D009442 1.6e-17 95.1 210 32.9
PGSC0003DMG400012911 Solanum tuberosum HOM05D007660 ORTHO05D009442 1.6e-17 95.1 211 32.2
EL10Ac7g16170 Beta vulgaris HOM05D007660 ORTHO05D009442 2.1e-17 94.7 222 32.0
Prupe.1G528200 Prunus persica HOM05D007660 ORTHO05D009442 2.1e-17 94.7 215 34.9
Sopen00g006420 Solanum pennellii HOM05D007660 ORTHO05D009442 2.1e-17 94.7 211 32.7
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 2.8e-17 94.4 213 35.7
Eucgr.A00716 Eucalyptus grandis HOM05D007660 ORTHO05D009442 3.6e-17 94.0 164 39.0
Sopen00g004320 Solanum pennellii HOM05D007660 ORTHO05D009442 3.6e-17 94.0 211 32.7
SGA_v2.0_scaffold126G33870 Striga asiatica HOM05D007660 ORTHO05D009442 3.6e-17 94.0 177 36.7
AUR62001643 Chenopodium quinoa HOM05D007660 ORTHO05D009442 4.7e-17 93.6 217 35.5
TWI56G0560 Tripterygium wilfordii HOM05D007660 ORTHO05D009442 4.7e-17 93.6 213 32.4
ClCG11G014470 Citrullus lanatus HOM05D007660 ORTHO05D009442 6.2e-17 93.2 176 36.4
ECA232G0036 Erigeron canadensis HOM05D007660 ORTHO05D009442 6.2e-17 93.2 212 33.0
FAN18G0914 Fragaria x ananassa HOM05D007660 ORTHO05D009442 6.2e-17 93.2 239 32.6
ATR0022G052 Amborella trichopoda HOM05D007660 ORTHO05D009442 8.0e-17 92.8 206 34.5
Psat5g045960 Pisum sativum HOM05D007660 ORTHO05D009442 8.0e-17 92.8 220 34.1
TPR.G26074 Trifolium pratense HOM05D007660 ORTHO05D009442 8.0e-17 92.8 222 35.1
Peaxi162Scf00281g00043 Petunia axillaris HOM05D007660 ORTHO05D009442 1.0e-16 92.4 211 33.6
Ca_15991_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 1.8e-16 91.7 224 33.5
Ciclev10000867m.g Citrus clementina HOM05D007660 ORTHO05D009442 1.8e-16 91.7 225 32.4
PSO541G1025 Papaver somniferum HOM05D007660 ORTHO05D009442 1.8e-16 91.7 205 34.6
CsaV3_3G047880 Cucumis sativus L. HOM05D007660 ORTHO05D009442 5.2e-16 90.1 176 35.2
Phvul.009G143500 Phaseolus vulgaris HOM05D007660 ORTHO05D009442 5.2e-16 90.1 214 33.6
VMungo1309G0569 Vigna mungo HOM05D007660 ORTHO05D009442 6.8e-16 89.7 224 32.1
Medtr3g100600 Medicago truncatula HOM05D007660 ORTHO05D009442 8.9e-16 89.4 230 32.6
Dinv42632 Davidia involucrata HOM05D007660 ORTHO05D009442 2.0e-15 88.2 216 32.4
Lsat_1_v5_gn_9_75000 Lactuca sativa HOM05D007660 ORTHO05D009442 2.0e-15 88.2 222 32.0
Sed0003873 Sechium edule HOM05D007660 ORTHO05D009442 2.0e-15 88.2 176 34.7
MSTRG.2718 Avicennia marina HOM05D007660 ORTHO05D009442 2.6e-15 87.8 227 31.7
FAN08G3071 Fragaria x ananassa HOM05D007660 ORTHO05D009442 2.6e-15 87.8 225 33.3
QL09p017232 Quercus lobata HOM05D007660 ORTHO05D009442 2.6e-15 87.8 215 36.7
Cpa.g.sc309.5 Carica papaya HOM05D007660 ORTHO05D009442 3.4e-15 87.4 178 33.1
Lj4g0004817 Lotus japonicus HOM05D007660 ORTHO05D009442 4.4e-15 87.0 206 34.0
SalBow3G4457 Salvia bowleyana HOM05D007660 ORTHO05D009442 5.8e-15 86.7 177 33.9
THA.LOC104806823 Tarenaya hassleriana HOM05D007660 ORTHO05D009442 9.8e-15 85.9 215 31.2
PSO675G1649 Papaver somniferum HOM05D007660 ORTHO05D009442 1.3e-14 85.5 208 34.1
Dinv44841 Davidia involucrata HOM05D007660 ORTHO05D009442 2.9e-14 84.3 181 34.3
FAN04G1497 Fragaria x ananassa HOM05D007660 ORTHO05D009442 6.4e-14 83.2 223 32.3
Lalb_Chr23g0270081 Lupinus albus HOM05D007660 ORTHO05D009442 6.4e-14 83.2 206 34.5
CAN.G1375.15 Capsicum annuum HOM05D007660 ORTHO05D009442 8.3e-14 82.8 204 28.9
RcHm_v2.0_Chr4g0424581 Rosa chinensis HOM05D007660 ORTHO05D009442 1.4e-13 82.0 221 29.4
Thhalv10001862m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 9.2e-13 79.3 223 29.1
PGR042G3094 Punica granatum HOM05D007660 ORTHO05D009442 3.5e-12 77.4 200 34.5
HanXRQChr09g0250871 Helianthus annuus HOM05D007660 ORTHO05D009442 1.3e-11 75.5 222 31.1
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 2.3e-11 74.7 67 49.3
AUR62019589 Chenopodium quinoa HOM05D002453 ORTHO05D008746 1.9e-10 71.6 71 47.9
TWI38G0410 Tripterygium wilfordii HOM05D002453 ORTHO05D008746 4.7e-09 67.0 69 47.8
Zm00001eb317730 Zea mays HOM05D002453 ORTHO05D008746 1.4e-08 65.5 219 31.5
arahy.Tifrunner.gnm1.ann1.QIT2C2 Arachis hypogaea HOM05D002453 ORTHO05D008746 1.8e-08 65.1 227 29.5
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 1.8e-08 65.1 127 34.6
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 2.3e-08 64.7 69 44.9
DCAR_019601 Daucus carota HOM05D002453 ORTHO05D008746 3.1e-08 64.3 228 26.3
Actinidia18805 Actinidia chinensis HOM05D002453 ORTHO05D008746 4.0e-08 63.9 126 34.1
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 4.0e-08 63.9 76 39.5
Cc05_g10980 Coffea canephora HOM05D002453 ORTHO05D008746 4.0e-08 63.9 71 45.1
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 4.0e-08 63.9 217 27.2
CsaV3_4G032750 Cucumis sativus L. HOM05D002453 ORTHO05D008746 6.8e-08 63.2 128 32.8
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 6.8e-08 63.2 210 29.0
CSS0010333 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D008746 8.9e-08 62.8 73 43.8
CiPaw.11G159300 Carya illinoinensis HOM05D002453 ORTHO05D008746 1.2e-07 62.4 68 45.6
DCAR_028951 Daucus carota HOM05D007660 ORTHO05D009442 1.2e-07 62.4 89 41.6
CiPaw.07G167700 Carya illinoinensis HOM05D007660 ORTHO05D009442 1.5e-07 62.0 115 35.7
Ah.05g168090 Amaranthus hybridus HOM05D002453 ORTHO05D008746 3.4e-07 60.8 68 42.6
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.4e-07 60.8 224 28.6
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 3.4e-07 60.8 224 28.1
Ciclev10023847m.g Citrus clementina HOM05D002453 ORTHO05D008746 4.4e-07 60.5 90 40.0
Potri.002G103600 Populus trichocarpa HOM05D007660 ORTHO05D009442 4.4e-07 60.5 74 44.6
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 4.4e-07 60.5 68 47.1
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 5.8e-07 60.1 76 38.2
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 5.8e-07 60.1 76 38.2
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 7.5e-07 59.7 77 33.8
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 9.8e-07 59.3 82 39.0
AUR62037559 Chenopodium quinoa HOM05D002453 ORTHO05D008746 9.8e-07 59.3 223 26.0
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 9.8e-07 59.3 193 28.0
SEGI_34607 Sequoiadendron giganteum HOM05D007660 ORTHO05D009442 1.3e-06 58.9 161 30.4
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 1.3e-06 58.9 232 27.2
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 1.3e-06 58.9 69 43.5
Zm00001eb359970 Zea mays HOM05D002986 ORTHO05D007611 1.3e-06 58.9 218 31.7
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 2.2e-06 58.2 136 32.4
Dinv40602 Davidia involucrata HOM05D002986 ORTHO05D007611 2.2e-06 58.2 201 30.8
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 2.2e-06 58.2 75 38.7
Oeu059257.1 Olea europaea HOM05D002453 ORTHO05D008746 2.2e-06 58.2 67 43.3
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 2.2e-06 58.2 81 37.0
A05p18370 Brassica napus HOM05D002753 ORTHO05D003097 2.9e-06 57.8 95 33.7
BraA05t20727Z Brassica rapa HOM05D002753 ORTHO05D003097 2.9e-06 57.8 95 33.7
ECA240G3448 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.9e-06 57.8 79 34.2
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 2.9e-06 57.8 265 28.3
PSO675G1932 Papaver somniferum HOM05D008994 ORTHO05D010954 3.7e-06 57.4 68 44.1
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 4.9e-06 57.0 123 31.7
Dinv30239 Davidia involucrata HOM05D000001 ORTHO05D010146 4.9e-06 57.0 75 36.0
Medtr8g058400 Medicago truncatula HOM05D002453 ORTHO05D008746 4.9e-06 57.0 216 26.9
CDE04G0843 Ceratophyllum demersum HOM05D007660 ORTHO05D009442 6.4e-06 56.6 141 33.3
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 6.4e-06 56.6 217 26.7
FAN04G2690 Fragaria x ananassa HOM05D002453 ORTHO05D008746 6.4e-06 56.6 66 47.0
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 6.4e-06 56.6 67 37.3
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 8.3e-06 56.2 77 40.3
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 8.3e-06 56.2 76 35.5
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 8.3e-06 56.2 76 35.5
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 8.3e-06 56.2 76 35.5
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 8.3e-06 56.2 124 30.6
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 8.3e-06 56.2 67 37.3
PSO210G3135 Papaver somniferum HOM05D008994 ORTHO05D010954 8.3e-06 56.2 76 38.2
Phvul.010G102600 Phaseolus vulgaris HOM05D002986 ORTHO05D007611 8.3e-06 56.2 201 29.9
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 8.3e-06 56.2 219 28.3
RhsimUnG0012600 Rhododendron simsii HOM05D002453 ORTHO05D008746 8.3e-06 56.2 111 36.0


User provided reference genes

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