Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.9e-137 491.9 248 100.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 3.8e-97 358.6 252 73.0
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.9e-81 305.4 251 62.2
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.0e-81 305.1 251 62.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.5e-80 303.5 251 59.8
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 4.3e-80 302.0 254 59.4
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-78 297.0 250 61.2
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 4.0e-78 295.4 252 57.5
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.2e-78 295.0 254 59.4
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 8.9e-78 294.3 251 59.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.2e-77 293.9 257 55.3
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.2e-77 293.9 256 57.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.5e-77 293.5 251 59.0
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.4e-77 292.4 246 59.3
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.4e-77 292.4 246 59.3
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 7.5e-77 291.2 246 58.9
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 9.8e-77 290.8 254 59.1
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.7e-76 290.0 252 58.7
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.9e-76 289.3 251 58.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 8.3e-76 287.7 244 58.2
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 8.3e-76 287.7 249 59.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 1.4e-75 287.0 256 58.2
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.9e-75 286.6 242 58.7
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.4e-75 286.2 232 62.5
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 2.4e-75 286.2 248 56.0
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.0e-75 284.6 185 71.9
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.6e-74 283.5 248 55.6
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 2.1e-74 283.1 255 57.6
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.1e-74 283.1 184 71.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.1e-74 283.1 248 57.7
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.7e-74 282.7 252 56.3
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.5e-74 282.3 257 58.8
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.5e-74 282.3 251 56.6
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.6e-74 282.0 247 58.7
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.6e-74 282.0 247 55.9
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.0e-74 281.6 189 68.3
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 7.8e-74 281.2 248 57.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.8e-74 281.2 247 58.7
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.0e-73 280.8 208 65.9
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.0e-73 280.8 241 57.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.0e-73 280.8 197 65.0
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.7e-73 280.0 253 55.7
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.3e-73 279.6 187 69.5
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.3e-73 279.6 250 55.6
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.3e-73 279.6 245 56.7
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.3e-73 279.6 247 56.7
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.3e-73 279.6 274 54.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.0e-73 279.3 251 55.8
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.1e-73 278.5 247 56.3
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 5.1e-73 278.5 206 65.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 8.6e-73 277.7 253 57.7
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.6e-73 277.7 246 55.7
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.6e-73 277.7 246 55.7
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.1e-72 277.3 274 53.6
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.5e-72 276.9 274 53.6
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.5e-72 276.9 251 58.2
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-72 276.9 246 56.1
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.5e-72 276.2 219 61.2
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.5e-72 276.2 246 55.3
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 3.3e-72 275.8 246 56.1
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 4.3e-72 275.4 246 55.3
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 5.6e-72 275.0 243 57.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 7.3e-72 274.6 249 55.0
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 7.3e-72 274.6 246 55.7
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 9.5e-72 274.2 253 56.1
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 9.5e-72 274.2 251 55.4
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.2e-71 273.9 186 67.2
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.1e-71 273.1 271 53.9
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 3.6e-71 272.3 187 66.8
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 6.2e-71 271.6 257 55.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 8.1e-71 271.2 247 56.3
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.1e-70 270.8 244 56.1
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.1e-70 270.8 244 55.3
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-70 270.8 269 54.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.1e-70 270.8 210 64.3
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.4e-70 270.4 186 66.1
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.4e-70 270.4 248 56.5
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.8e-70 270.0 253 54.5
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.8e-70 270.0 252 56.3
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 2.3e-70 269.6 247 56.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.3e-70 269.6 246 55.7
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 3.1e-70 269.2 248 56.5
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 4.0e-70 268.9 246 56.1
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 4.0e-70 268.9 250 55.6
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 6.8e-70 268.1 246 56.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 6.8e-70 268.1 184 66.3
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 6.8e-70 268.1 250 56.0
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 8.9e-70 267.7 288 52.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.2e-69 267.3 225 58.2
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-69 266.5 246 54.1
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.6e-69 266.2 261 51.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 3.4e-69 265.8 247 55.5
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 2.2e-68 263.1 248 55.6
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.1e-67 260.8 249 53.0
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.3e-65 253.8 255 53.7
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.9e-65 252.3 172 69.2
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 8.6e-65 251.1 246 52.0
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.3e-64 248.8 194 62.4
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 6.2e-63 245.0 350 44.0
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.8e-62 243.4 179 65.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-61 240.7 206 58.7
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 9.9e-61 237.7 190 62.1
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 4.9e-60 235.3 167 66.5
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 8.4e-60 234.6 179 63.1
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.0e-57 227.6 236 50.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.0e-57 227.6 186 59.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.0e-57 226.1 186 59.7
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 6.6e-57 224.9 216 54.6
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 8.7e-57 224.6 186 58.1
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.5e-56 223.8 252 50.4
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.3e-56 222.6 171 62.6
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 3.1e-54 216.1 209 54.1
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 6.9e-54 214.9 248 49.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.3e-52 210.7 145 66.9
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 8.4e-52 208.0 146 64.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.4e-51 207.2 162 61.1
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 2.5e-48 196.4 195 50.8
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.6e-47 192.6 200 48.0
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.8e-46 190.3 184 55.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 2.6e-45 186.4 159 61.6
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.4e-45 186.0 188 53.7
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 9.9e-45 184.5 195 50.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.9e-44 183.0 178 53.9
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.9e-43 180.3 136 63.2
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.5e-37 159.1 116 63.8
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.1e-34 150.2 155 54.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 6.0e-34 148.7 158 50.0
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.0e-33 147.9 170 50.0
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.1e-32 144.4 159 50.3
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.9e-32 143.7 100 67.0
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.8e-31 139.8 101 63.4
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.2e-31 138.3 183 44.8
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 8.2e-31 138.3 176 46.6
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-30 137.9 162 48.1
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.4e-30 137.5 111 60.4
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 6.5e-28 128.6 131 50.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.4e-27 127.5 127 48.8
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.9e-24 117.1 119 49.6
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-23 114.4 118 47.5
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.2e-23 113.6 134 45.5
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.2e-23 113.6 134 45.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.4e-22 110.2 109 57.8
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.8e-20 102.8 69 66.7
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-18 97.4 185 32.4
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-16 90.9 67 61.2
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 2.5e-16 90.1 67 61.2
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 6.3e-15 85.5 65 58.5
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 6.3e-15 85.5 70 57.1
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 7.2e-11 72.0 52 61.5
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 9.4e-11 71.6 122 39.3
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.8e-09 65.1 95 41.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.6e-08 63.5 95 40.0


User provided reference genes

Program Settings