Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.2e-74 283.1 144 100.0
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 1.0e-33 147.1 148 58.8
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 7.3e-24 114.4 135 52.6
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 4.9e-12 75.1 57 56.1
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 3.2e-11 72.4 57 52.6
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 1.2e-10 70.5 74 48.6
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 2.1e-10 69.7 57 52.6
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.1e-10 69.7 57 52.6
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.1e-10 69.7 57 52.6
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 6.0e-10 68.2 40 67.5
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 7.9e-10 67.8 57 52.6
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 1.3e-09 67.0 64 53.1
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 1.3e-09 67.0 58 55.2
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.3e-09 66.2 56 50.0
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 3.0e-09 65.9 86 43.0
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 3.0e-09 65.9 58 50.0
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 3.9e-09 65.5 64 46.9
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 3.9e-09 65.5 62 51.6
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 3.9e-09 65.5 60 50.0
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 3.9e-09 65.5 32 78.1
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 5.1e-09 65.1 61 49.2
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 6.7e-09 64.7 58 53.4
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 6.7e-09 64.7 62 50.0
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 6.7e-09 64.7 61 54.1
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 6.7e-09 64.7 58 51.7
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 8.7e-09 64.3 59 54.2
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 8.7e-09 64.3 31 83.9
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 8.7e-09 64.3 58 50.0
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 1.1e-08 63.9 61 49.2
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 1.5e-08 63.5 61 50.8
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.9e-08 63.2 91 42.9
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.9e-08 63.2 62 48.4
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 1.9e-08 63.2 31 80.6
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 2.5e-08 62.8 37 64.9
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 3.3e-08 62.4 36 66.7
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 4.3e-08 62.0 57 49.1
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 4.3e-08 62.0 64 51.6
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 4.3e-08 62.0 40 62.5
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 4.3e-08 62.0 61 54.1
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 4.3e-08 62.0 58 50.0
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 7.4e-08 61.2 85 38.8
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 7.4e-08 61.2 58 50.0
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 1.3e-07 60.5 31 74.2
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 1.3e-07 60.5 49 53.1
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 1.3e-07 60.5 56 48.2
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 1.3e-07 60.5 31 74.2
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 1.6e-07 60.1 156 33.3
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 2.1e-07 59.7 57 43.9
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 2.1e-07 59.7 30 76.7
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 2.8e-07 59.3 56 48.2
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 2.8e-07 59.3 56 48.2
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 2.8e-07 59.3 57 47.4
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 2.8e-07 59.3 91 42.9
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 3.7e-07 58.9 58 50.0
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 4.8e-07 58.5 56 50.0
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 4.8e-07 58.5 34 67.6
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 4.8e-07 58.5 57 47.4
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 4.8e-07 58.5 34 64.7
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 6.2e-07 58.2 59 44.1
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 8.1e-07 57.8 60 51.7
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 1.1e-06 57.4 152 32.9
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.1e-06 57.4 36 63.9
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 1.1e-06 57.4 30 73.3
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.1e-06 57.4 30 73.3
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 1.1e-06 57.4 59 49.2
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 1.1e-06 57.4 29 75.9
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 1.4e-06 57.0 28 78.6
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 1.4e-06 57.0 53 47.2
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.8e-06 56.6 50 48.0
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 2.4e-06 56.2 29 72.4
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 3.1e-06 55.8 51 49.0
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 4.0e-06 55.5 29 72.4
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 4.0e-06 55.5 29 72.4
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 4.0e-06 55.5 29 72.4
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 4.0e-06 55.5 29 72.4
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 5.3e-06 55.1 35 60.0
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 5.3e-06 55.1 35 60.0
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 9.0e-06 54.3 57 47.4
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 9.0e-06 54.3 51 49.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 9.0e-06 54.3 48 52.1
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 9.0e-06 54.3 29 72.4


User provided reference genes

Program Settings