Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 0.0e+00 1166.0 584 100.0
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 7.0e-190 667.9 593 62.7
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 5.5e-171 605.1 589 56.5
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 4.6e-133 479.2 447 57.9
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 3.0e-100 370.2 615 37.2
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 3.9e-100 369.8 598 37.0
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 1.4e-97 361.3 629 36.6
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 5.3e-97 359.4 645 35.7
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 5.3e-97 359.4 645 35.7
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 9.0e-97 358.6 654 35.6
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 8.5e-95 352.1 592 38.0
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 4.2e-94 349.7 634 36.4
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 3.6e-93 346.7 637 36.1
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 6.1e-93 345.9 648 36.6
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 1.4e-92 344.7 636 34.7
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 2.0e-91 340.9 643 35.0
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 2.5e-91 340.5 604 36.4
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 1.7e-90 337.8 643 34.4
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 2.2e-90 337.4 619 35.2
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 1.1e-89 335.1 644 34.2
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 1.8e-89 334.3 631 36.3
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.8e-89 334.3 612 34.6
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 2.4e-89 334.0 643 34.4
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 4.1e-89 333.2 644 34.2
Zm00001eb254770 Zea mays HOM05D002969 ORTHO05D003308 5.3e-89 332.8 311 58.8
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 3.8e-87 326.6 643 33.6
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 8.5e-87 325.5 667 35.2
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 1.1e-86 325.1 645 34.9
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 3.2e-86 323.6 614 35.7
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 7.2e-86 322.4 632 34.8
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 7.2e-86 322.4 633 35.7
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 2.1e-85 320.9 642 33.6
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 7.9e-85 318.9 632 33.9
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 3.0e-84 317.0 645 33.5
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 6.7e-84 315.8 649 33.9
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 8.8e-84 315.5 639 33.8
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 8.8e-84 315.5 639 33.8
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 8.8e-84 315.5 639 33.8
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 1.1e-83 315.1 639 33.5
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 1.1e-83 315.1 639 33.5
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 2.6e-83 313.9 629 32.9
Zm00001eb247980 Zea mays HOM05D002969 ORTHO05D003308 4.4e-83 313.2 289 59.5
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 1.7e-82 311.2 638 33.2
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 1.7e-82 311.2 627 34.4
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 2.2e-82 310.8 639 32.7
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 2.8e-82 310.5 642 34.1
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 3.7e-82 310.1 626 33.5
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 6.3e-82 309.3 628 35.2
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 6.3e-82 309.3 626 35.5
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 6.3e-82 309.3 645 34.3
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.4e-81 308.1 641 32.8
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 7.0e-81 305.8 611 33.1
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 9.1e-81 305.4 599 34.1
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 1.2e-80 305.1 620 34.5
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 2.0e-80 304.3 692 33.5
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.5e-80 303.5 669 32.9
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.7e-80 302.4 645 33.5
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 7.7e-80 302.4 658 32.7
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.3e-79 301.6 647 33.7
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 1.3e-79 301.6 660 32.9
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 1.7e-79 301.2 636 31.9
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 2.2e-79 300.8 646 33.4
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 2.9e-79 300.4 613 33.6
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.9e-79 300.4 647 33.5
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 5.0e-79 299.7 619 34.4
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 6.5e-79 299.3 612 32.8
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 1.1e-78 298.5 648 33.8
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 1.5e-78 298.1 640 32.7
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.9e-78 297.7 641 33.5
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 3.2e-78 297.0 623 34.5
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 1.6e-77 294.7 661 33.1
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 1.0e-76 292.0 657 32.9
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 3.0e-76 290.4 646 33.1
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 3.0e-76 290.4 640 34.1
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 5.2e-76 289.7 617 32.9
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 3.3e-75 287.0 651 32.9
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 3.3e-75 287.0 648 31.8
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 4.4e-75 286.6 663 32.1
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 9.7e-75 285.4 640 32.8
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 1.3e-74 285.0 662 32.2
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 1.7e-74 284.6 626 34.3
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 2.8e-74 283.9 640 32.8
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 4.8e-74 283.1 625 32.3
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 4.8e-74 283.1 717 31.4
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 4.8e-74 283.1 643 31.1
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.1e-73 282.0 644 32.3
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 7.0e-73 279.3 625 32.2
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 1.2e-72 278.5 624 33.7
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.6e-72 278.1 613 32.3
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 2.6e-72 277.3 633 33.3
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 2.2e-71 274.2 695 30.5
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 2.2e-71 274.2 619 33.0
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 5.0e-71 273.1 628 31.2
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 3.2e-70 270.4 697 30.3
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 4.2e-70 270.0 622 33.8
Os05g0569900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 7.2e-70 269.2 266 59.0
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 2.7e-69 267.3 619 31.8
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 4.7e-69 266.5 594 31.6
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 1.4e-68 265.0 517 35.8
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 3.0e-68 263.8 532 34.0
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 3.4e-67 260.4 624 33.3
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 4.4e-67 260.0 596 31.0
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 1.7e-66 258.1 700 31.0
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 3.7e-66 256.9 524 35.1
MBI06_g22353_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.7e-66 256.9 373 39.9
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 1.4e-65 255.0 617 32.3
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 5.4e-65 253.1 623 31.8
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.2e-64 251.9 422 37.2
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 4.5e-64 250.0 418 37.1
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 1.0e-63 248.8 633 32.1
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 3.2e-62 243.8 630 31.0
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 2.7e-61 240.7 621 31.7
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 5.7e-59 233.0 601 32.4
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 1.7e-58 231.5 628 32.5
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 1.7e-55 221.5 516 32.8
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 1.9e-54 218.0 642 29.4
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 1.2e-53 215.3 421 35.2
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 4.7e-53 213.4 584 30.1
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 5.7e-51 206.5 581 29.3
vmacro15027 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.3e-50 205.3 307 38.4
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 9.2e-49 199.1 616 28.6
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 2.7e-48 197.6 683 28.0
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 5.9e-48 196.4 478 31.0
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 7.8e-48 196.1 383 35.2
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 2.4e-41 174.5 339 35.1
Zm00001eb254680 Zea mays HOM05D002969 ORTHO05D003308 3.3e-38 164.1 197 48.2
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 7.3e-38 162.9 379 34.6
CiPaw.01G219400 Carya illinoinensis HOM05D002969 ORTHO05D003308 1.2e-35 155.6 260 36.5
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 5.8e-35 153.3 387 30.7
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.8e-35 152.5 378 30.7
vmacro15024 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 2.2e-34 151.4 265 35.8
Cpa.g.sc34.76 Carica papaya HOM05D002969 ORTHO05D003308 1.1e-33 149.1 267 35.6
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 1.0e-31 142.5 362 31.2
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.9e-27 125.9 347 28.0
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.9e-27 125.9 337 28.8
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 2.2e-26 124.8 347 28.0
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 6.6e-23 113.2 235 34.5
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 9.6e-22 109.4 251 32.7
PSO478G1045 Papaver somniferum HOM05D002969 ORTHO05D003308 5.2e-20 103.6 173 37.6
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 3.4e-19 100.9 463 24.4
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 6.4e-18 96.7 221 32.1
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 6.4e-18 96.7 221 32.1
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.1e-17 95.9 214 32.2
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 3.2e-17 94.4 280 30.0
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.5e-14 85.5 213 30.0
GSVIVG01001689001 Vitis vinifera HOM05D002969 ORTHO05D003308 1.3e-13 82.4 167 29.3
SEGI_18157 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 1.6e-13 82.0 221 30.8
Zm00001eb247970 Zea mays HOM05D002969 ORTHO05D003308 8.1e-13 79.7 110 43.6
Zm00001eb254780 Zea mays HOM05D002969 ORTHO05D003308 8.1e-13 79.7 110 43.6
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 2.4e-12 78.2 80 45.0
Zm00001eb254630 Zea mays HOM05D002969 ORTHO05D003308 1.7e-10 72.0 93 46.2
PSO017G1278 Papaver somniferum HOM05D002969 ORTHO05D003308 4.9e-10 70.5 67 49.3
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.9e-09 68.6 71 46.5
SEGI_18101 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 7.1e-09 66.6 93 39.8
SEGI_00337 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 6.0e-08 63.5 130 33.1
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 7.9e-08 63.2 126 30.2
Peaxi162Scf00006g00211 Petunia axillaris HOM05D002969 ORTHO05D003308 1.0e-07 62.8 109 34.9
Lalb_Chr10g0094391 Lupinus albus HOM05D002969 ORTHO05D003308 1.7e-07 62.0 67 44.8
RcHm_v2.0_Chr6g0291541 Rosa chinensis HOM05D002969 ORTHO05D003308 5.1e-07 60.5 128 29.7
Zm00001eb247960 Zea mays HOM05D002969 ORTHO05D003308 5.1e-07 60.5 35 77.1
Zm00001eb254790 Zea mays HOM05D002969 ORTHO05D003308 5.1e-07 60.5 35 77.1
CAN.G397.52 Capsicum annuum HOM05D002969 ORTHO05D003308 2.5e-06 58.2 122 29.5


User provided reference genes

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