Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.3e-130 469.9 274 100.0
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 2.5e-81 306.2 261 69.7
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.7e-58 230.3 226 58.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.7e-58 230.3 242 58.7
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 2.3e-58 229.9 214 60.7
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.1e-57 227.6 255 55.7
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 5.6e-57 225.3 223 59.6
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 9.6e-57 224.6 194 63.9
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 2.8e-56 223.0 226 56.6
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.8e-56 223.0 193 63.7
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.8e-56 223.0 223 59.2
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.1e-55 221.1 240 55.0
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.1e-55 221.1 216 59.7
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 1.4e-55 220.7 193 62.7
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.4e-55 220.7 267 52.1
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.8e-55 220.3 219 58.4
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 1.8e-55 220.3 208 60.1
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 6.9e-55 218.4 215 57.2
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 9.0e-55 218.0 190 60.0
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 9.0e-55 218.0 258 55.8
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.5e-54 217.2 231 57.6
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.5e-54 217.2 186 62.9
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 2.0e-54 216.9 218 58.3
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 2.0e-54 216.9 259 52.5
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.0e-54 216.9 204 58.3
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 2.6e-54 216.5 222 55.0
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 3.4e-54 216.1 216 57.9
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 3.4e-54 216.1 215 56.3
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 4.4e-54 215.7 221 58.4
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 5.8e-54 215.3 247 52.2
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 7.6e-54 214.9 231 55.8
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 9.9e-54 214.5 203 58.6
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.7e-53 213.8 262 53.8
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.7e-53 213.8 219 55.3
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 2.2e-53 213.4 264 53.4
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 2.9e-53 213.0 249 53.0
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.8e-53 212.6 266 51.9
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 6.4e-53 211.8 240 57.1
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 8.4e-53 211.5 260 52.7
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.4e-52 210.7 240 55.4
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.9e-52 210.3 260 52.7
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.2e-52 209.1 223 57.4
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 4.2e-52 209.1 248 55.6
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.2e-52 209.1 209 58.4
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 5.4e-52 208.8 198 61.6
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 5.4e-52 208.8 244 52.5
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 5.4e-52 208.8 240 56.7
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.4e-52 208.8 266 53.0
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 7.1e-52 208.4 197 59.9
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.3e-52 208.0 201 60.2
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.3e-52 208.0 201 60.2
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 9.3e-52 208.0 201 60.2
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.6e-51 207.2 225 56.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 3.5e-51 206.1 264 52.7
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 6.0e-51 205.3 179 63.7
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 6.0e-51 205.3 257 50.2
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 7.8e-51 204.9 194 58.8
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.3e-50 204.1 227 53.3
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.7e-50 203.8 264 50.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 3.0e-50 203.0 236 50.8
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 3.9e-50 202.6 248 51.6
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 6.6e-50 201.8 267 51.3
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 6.6e-50 201.8 224 54.0
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 6.6e-50 201.8 226 52.7
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 6.6e-50 201.8 182 57.1
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 6.6e-50 201.8 263 51.7
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.5e-49 200.7 214 55.1
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 7.3e-49 198.4 266 50.4
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.6e-48 197.2 254 51.6
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.6e-48 197.2 254 50.8
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.6e-48 197.2 256 53.5
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 4.8e-48 195.7 260 50.0
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 1.8e-47 193.7 254 49.6
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 1.8e-47 193.7 254 49.6
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 1.8e-47 193.7 254 49.6
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.8e-47 193.7 254 50.4
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 5.3e-47 192.2 250 49.2
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 5.3e-47 192.2 236 51.7
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 9.0e-47 191.4 262 50.4
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 9.0e-47 191.4 264 45.8
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.2e-46 191.0 191 55.0
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.2e-46 191.0 191 55.0
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.2e-46 191.0 268 49.3
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.2e-46 191.0 268 49.3
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 9.9e-46 188.0 192 54.7
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 2.9e-45 186.4 184 59.2
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 4.9e-45 185.7 180 57.2
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 4.2e-44 182.6 239 49.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.4e-44 182.2 238 50.4
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.2e-43 181.0 225 52.0
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.6e-43 180.6 225 52.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.5e-43 179.5 191 56.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 3.5e-43 179.5 190 54.2
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 3.9e-42 176.0 162 60.5
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.8e-39 167.2 216 49.1
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 4.0e-39 166.0 187 51.3
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.7e-37 160.6 175 57.7
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 4.9e-37 159.1 181 54.1
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 4.9e-37 159.1 183 53.0
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.9e-36 157.1 185 52.4
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 2.1e-35 153.7 129 65.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.0e-34 151.4 173 51.4
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 1.8e-34 150.6 125 64.0
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 6.7e-34 148.7 168 51.2
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 3.3e-33 146.4 178 51.7
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 5.6e-33 145.6 200 49.0
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.3e-32 144.4 208 45.7
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.4e-31 141.0 184 48.4
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.8e-31 140.6 194 45.9
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 2.9e-29 133.3 225 40.4
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 3.8e-29 132.9 195 42.6
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.9e-28 130.6 127 57.5
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 5.5e-28 129.0 106 68.9
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 2.5e-25 120.2 194 40.7
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 5.7e-25 119.0 216 40.3
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 1.0e-21 108.2 127 52.0
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 2.9e-21 106.7 104 58.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 8.5e-21 105.1 103 54.4
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 1.1e-20 104.8 174 46.6
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 1.1e-20 104.8 174 46.6
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 7.2e-20 102.1 105 54.3
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 1.3e-16 91.3 207 34.8
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 4.1e-15 86.3 192 40.6
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.7e-13 80.9 75 61.3
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 3.8e-13 79.7 74 59.5
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 6.5e-13 79.0 166 31.9
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 5.5e-12 75.9 173 31.8
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 7.2e-12 75.5 155 36.1
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 1.4e-10 71.2 60 61.7
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 5.1e-10 69.3 77 53.2
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 6.7e-10 68.9 46 69.6
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 3.3e-09 66.6 65 58.5
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 1.1e-07 61.6 189 29.1
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 2.0e-06 57.4 34 85.3


User provided reference genes

Program Settings