Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 6.9e-104 380.6 181 100.0
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.9e-33 145.2 75 96.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 6.4e-33 144.8 224 39.3
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.9e-21 106.7 191 36.6
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.5e-21 106.3 199 34.2
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.2e-20 104.0 199 34.7
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.1e-20 103.2 180 33.9
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 2.1e-20 103.2 188 35.1
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.8e-20 102.8 191 33.5
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.8e-19 100.1 189 34.4
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.8e-19 100.1 184 33.2
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.3e-19 99.8 208 32.7
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.3e-19 99.8 191 35.1
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.3e-19 99.8 192 31.8
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.3e-19 99.8 186 34.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 3.1e-19 99.4 183 32.2
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 4.0e-19 99.0 184 34.8
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.0e-19 99.0 196 33.7
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 6.8e-19 98.2 189 31.7
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 6.8e-19 98.2 194 33.0
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 6.8e-19 98.2 186 34.4
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.5e-18 97.1 182 35.2
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 2.0e-18 96.7 183 34.4
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 2.0e-18 96.7 200 30.0
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 9.9e-18 94.4 197 36.5
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 9.9e-18 94.4 197 36.5
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.3e-17 94.0 197 34.0
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.3e-17 94.0 187 30.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.3e-17 94.0 184 33.7
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.7e-17 93.6 178 34.8
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.7e-17 93.6 185 35.1
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.7e-17 93.6 190 34.2
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.7e-17 93.6 206 32.0
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.7e-17 93.6 188 31.4
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 1.7e-17 93.6 190 32.1
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 2.2e-17 93.2 191 36.1
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.2e-17 93.2 187 34.8
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.9e-17 92.8 191 33.0
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.9e-17 92.8 188 33.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 3.7e-17 92.4 182 33.0
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 3.7e-17 92.4 186 33.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 4.9e-17 92.0 181 33.1
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 6.4e-17 91.7 191 32.5
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 8.3e-17 91.3 197 31.0
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 8.3e-17 91.3 211 31.3
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.1e-16 90.9 189 33.3
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.1e-16 90.9 200 32.5
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.1e-16 90.9 175 32.0
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.1e-16 90.9 183 33.9
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.1e-16 90.9 180 33.3
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.4e-16 90.5 188 30.3
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.4e-16 90.5 179 33.5
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.4e-16 90.5 186 32.8
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.4e-16 89.7 194 30.4
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 2.4e-16 89.7 188 31.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 3.2e-16 89.4 192 32.3
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 4.1e-16 89.0 196 35.7
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 4.1e-16 89.0 72 55.6
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 5.4e-16 88.6 207 30.9
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 7.1e-16 88.2 197 30.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 7.1e-16 88.2 210 31.9
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 9.2e-16 87.8 180 32.8
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 9.2e-16 87.8 185 34.6
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.2e-15 87.4 183 35.0
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.2e-15 87.4 194 34.0
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 2.1e-15 86.7 180 30.0
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 2.1e-15 86.7 189 30.7
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.7e-15 86.3 209 27.8
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.7e-15 86.3 187 32.1
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.7e-15 86.3 194 33.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 4.6e-15 85.5 189 31.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.0e-15 85.1 175 32.0
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.0e-15 85.1 174 31.0
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 6.0e-15 85.1 189 33.3
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 7.8e-15 84.7 77 55.8
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.0e-14 84.3 45 75.6
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.0e-14 84.3 189 29.6
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.0e-14 84.3 194 29.9
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.3e-14 84.0 198 27.8
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.7e-14 83.6 189 29.1
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.7e-14 83.6 189 29.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.7e-14 83.6 192 31.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.7e-14 83.6 189 32.8
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.7e-14 83.6 200 31.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.3e-14 83.2 171 31.6
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.3e-14 83.2 212 29.2
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.3e-14 83.2 212 29.2
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.3e-14 83.2 45 73.3
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.3e-14 83.2 45 73.3
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 3.0e-14 82.8 57 63.2
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.9e-14 82.4 195 30.8
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 5.1e-14 82.0 178 29.2
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 6.6e-14 81.6 175 30.9
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 6.6e-14 81.6 191 30.9
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 8.6e-14 81.3 39 84.6
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.5e-13 80.5 45 68.9
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.5e-13 79.7 40 77.5
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-13 79.7 40 77.5
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.5e-13 79.7 184 28.8
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.3e-13 79.3 207 30.9
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 4.3e-13 79.0 69 49.3
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 5.6e-13 78.6 45 73.3
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 7.3e-13 78.2 45 68.9
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 7.3e-13 78.2 48 68.8
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.2e-12 77.4 199 29.6
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 3.6e-12 75.9 198 27.8
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.2e-12 75.1 98 39.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.1e-11 74.3 39 74.4
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.1e-11 74.3 187 33.2
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.4e-11 73.9 73 47.9
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 1.5e-10 70.5 50 60.0
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.0e-10 70.1 192 28.1
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.2e-09 66.6 184 29.9
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.9e-09 66.2 203 25.6
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 2.9e-09 66.2 63 46.0
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 4.9e-09 65.5 193 29.0
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 6.0e-07 58.5 39 59.0
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 6.0e-07 58.5 36 61.1


User provided reference genes

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