Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 2.2e-208 728.8 379 100.0
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 1.8e-98 363.6 380 55.0
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 8.7e-24 115.5 336 25.3
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 8.7e-24 115.5 321 31.2
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 8.7e-24 115.5 333 28.8
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 1.2e-22 111.7 301 26.9
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 3.6e-22 110.2 313 26.2
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.1e-21 108.6 300 28.0
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 3.4e-20 103.6 301 26.2
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 3.4e-20 103.6 336 27.1
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.3e-19 101.7 301 24.9
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.9e-19 99.8 301 27.6
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.4e-18 98.2 306 24.8
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 2.4e-18 97.4 329 25.5
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 2.4e-18 97.4 306 26.8
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 2.4e-18 97.4 312 26.6
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 3.2e-18 97.1 241 25.3
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 3.2e-18 97.1 289 29.1
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 3.2e-18 97.1 289 29.1
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 3.2e-18 97.1 323 26.6
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 5.4e-18 96.3 302 28.8
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 5.4e-18 96.3 324 25.0
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 7.1e-18 95.9 306 25.8
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 9.3e-18 95.5 328 25.0
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 9.3e-18 95.5 329 25.8
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 9.3e-18 95.5 335 24.2
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 2.7e-17 94.0 281 27.8
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 2.7e-17 94.0 330 26.7
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 2.7e-17 94.0 313 24.3
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 2.7e-17 94.0 305 28.2
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.5e-17 93.6 301 24.3
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 4.6e-17 93.2 337 27.3
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 6.0e-17 92.8 297 26.9
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 7.8e-17 92.4 292 28.1
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 3.0e-16 90.5 166 34.9
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 1.5e-15 88.2 251 28.7
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.5e-15 88.2 326 23.9
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 1.9e-15 87.8 301 24.3
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 3.3e-15 87.0 331 24.8
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 3.3e-15 87.0 239 29.7
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 7.3e-15 85.9 270 26.7
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 7.3e-15 85.9 326 24.2
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 1.6e-14 84.7 230 27.8
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 2.1e-14 84.3 289 26.0
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 2.1e-14 84.3 229 27.1
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 2.1e-14 84.3 140 37.1
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 2.1e-14 84.3 223 29.6
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 4.8e-14 83.2 238 29.8
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 6.2e-14 82.8 282 25.9
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 1.1e-13 82.0 157 33.1
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.1e-13 82.0 204 31.9
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 1.1e-13 82.0 270 28.5
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 1.4e-13 81.6 258 28.3
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 1.8e-13 81.3 330 24.8
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 2.4e-13 80.9 327 25.4
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 3.1e-13 80.5 322 25.5
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 3.1e-13 80.5 213 31.5
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 3.1e-13 80.5 213 31.5
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 3.1e-13 80.5 322 24.5
Os02g0306550 Oryza sativa ssp. japonica HOM05D044331 ORTHO05D049861 5.3e-13 79.7 190 34.2
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 5.3e-13 79.7 299 24.4
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 4.5e-12 76.6 154 34.4
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 1.3e-11 75.1 232 25.4
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.7e-11 74.7 301 24.6
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 2.9e-11 73.9 177 30.5
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.8e-11 73.6 146 34.2
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 3.8e-11 73.6 246 26.4
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 1.4e-10 71.6 227 27.3
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 1.4e-10 71.6 313 24.3
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.9e-10 71.2 166 34.3
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 4.2e-10 70.1 198 28.8
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 5.4e-10 69.7 174 28.7
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 7.1e-10 69.3 187 29.4
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 2.1e-09 67.8 158 29.1
Zm00001eb335740 Zea mays HOM05D044331 ORTHO05D049861 7.9e-09 65.9 211 31.8
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 1.0e-08 65.5 303 23.1
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.8e-08 64.7 332 22.6
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.8e-08 64.7 232 25.0
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 3.9e-08 63.5 133 32.3
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 3.3e-07 60.5 131 32.1
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 4.3e-07 60.1 131 32.1
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 5.6e-07 59.7 332 21.1
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 5.6e-07 59.7 127 32.3
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 3.7e-06 57.0 118 33.9
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 4.8e-06 56.6 120 31.7
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 8.1e-06 55.8 159 30.2


User provided reference genes

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