Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 9.9e-95 350.1 179 100.0
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.7e-75 286.2 180 80.6
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 3.7e-65 251.9 177 69.5
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 5.3e-64 248.1 177 70.1
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 6.9e-64 247.7 179 68.7
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.2e-63 246.9 177 71.2
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.5e-63 246.5 179 69.8
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.0e-63 246.1 178 70.8
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 4.5e-63 245.0 162 73.5
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.0e-62 243.8 177 69.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.0e-62 243.8 177 70.1
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.3e-62 243.4 177 67.2
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.3e-62 243.4 177 67.8
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 2.2e-62 242.7 177 69.5
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.2e-62 242.7 177 68.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.9e-62 242.3 177 66.7
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 2.9e-62 242.3 177 68.4
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 3.8e-62 241.9 177 68.9
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 6.5e-62 241.1 179 68.7
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 6.5e-62 241.1 177 70.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 8.4e-62 240.7 177 68.4
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.1e-61 240.4 177 67.8
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.4e-61 240.0 177 68.9
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.4e-61 240.0 177 69.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.9e-61 239.6 177 68.9
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 2.5e-61 239.2 177 67.8
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 4.2e-61 238.4 179 67.6
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.2e-61 238.4 177 66.1
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 5.5e-61 238.0 175 69.1
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 5.5e-61 238.0 160 72.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 5.5e-61 238.0 177 68.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 7.1e-61 237.7 177 68.4
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 9.3e-61 237.3 177 65.5
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.6e-60 236.5 177 67.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.6e-60 236.5 177 67.8
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.1e-60 236.1 177 68.9
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 3.5e-60 235.3 177 67.2
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 3.5e-60 235.3 177 67.8
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 6.0e-60 234.6 177 67.8
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.0e-59 233.8 177 67.8
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.8e-59 233.0 176 67.0
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.3e-59 232.6 177 68.9
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.0e-59 232.3 177 67.2
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.0e-59 232.3 177 69.5
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 3.9e-59 231.9 177 63.8
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.7e-59 231.1 179 67.6
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 8.7e-59 230.7 160 71.9
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.1e-58 230.3 177 66.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.9e-58 229.6 180 64.4
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.9e-58 229.6 176 66.5
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.9e-58 229.6 160 69.4
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.9e-58 229.6 177 66.7
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 3.3e-58 228.8 177 66.7
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 4.3e-58 228.4 177 66.7
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.7e-58 228.0 177 67.2
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 7.4e-58 227.6 177 67.8
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 7.4e-58 227.6 177 65.5
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 9.6e-58 227.3 177 66.7
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.3e-57 226.9 177 67.8
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.6e-57 226.5 175 64.0
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 2.8e-57 225.7 177 65.5
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.7e-57 225.3 160 68.8
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.7e-57 225.3 177 65.5
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 4.8e-57 224.9 178 64.6
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 4.8e-57 224.9 178 65.7
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.8e-57 224.9 177 66.1
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 4.8e-57 224.9 177 66.1
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 6.2e-57 224.6 177 63.8
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 8.2e-57 224.2 178 64.6
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 1.4e-56 223.4 178 64.0
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.4e-56 223.4 174 64.4
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.8e-56 223.0 178 64.0
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.8e-56 223.0 177 66.7
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.4e-56 222.6 178 64.6
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.1e-56 222.2 178 64.6
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.1e-56 222.2 177 64.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.3e-56 221.5 177 65.0
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 9.0e-56 220.7 177 65.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.2e-55 220.3 177 66.1
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.0e-55 219.5 179 65.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 2.6e-55 219.2 177 63.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-54 216.9 177 64.4
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.2e-54 216.1 185 62.2
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.8e-54 215.3 177 59.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 6.5e-54 214.5 174 66.1
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.4e-54 214.2 179 63.1
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.4e-54 214.2 177 65.0
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.1e-53 213.8 160 65.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.4e-53 213.4 187 60.4
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.9e-53 213.0 177 60.5
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.9e-53 213.0 167 66.5
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.5e-53 212.6 168 66.7
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 4.2e-53 211.8 162 66.0
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 5.5e-53 211.5 175 63.4
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 7.1e-53 211.1 177 59.3
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 9.3e-53 210.7 164 67.7
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.6e-52 209.9 177 60.5
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.3e-51 206.8 136 73.5
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.3e-51 206.8 157 70.1
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.8e-51 206.5 161 67.1
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 3.0e-51 205.7 136 73.5
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 8.7e-51 204.1 158 67.1
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.9e-50 203.0 158 65.2
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.9e-50 203.0 178 59.6
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 3.3e-50 202.2 160 66.2
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.2e-49 199.5 177 58.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 4.8e-49 198.4 177 55.4
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.4e-48 196.8 177 58.2
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.8e-48 196.4 157 65.6
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.8e-48 196.4 158 66.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.1e-48 195.3 158 65.8
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 4.1e-48 195.3 160 64.4
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.2e-47 193.7 157 65.6
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.5e-47 193.4 155 67.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.7e-46 189.9 182 54.9
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.9e-46 189.1 157 64.3
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 5.0e-46 188.3 158 62.7
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.5e-45 186.0 176 51.1
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.1e-44 183.0 136 69.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.6e-44 182.2 178 51.7
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 3.6e-44 182.2 119 76.5
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.1e-44 181.4 176 56.2
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.1e-43 178.3 177 57.6
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-42 176.8 176 56.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 6.3e-41 171.4 107 76.6
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 2.4e-40 169.5 176 53.4
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.0e-38 164.1 177 49.7
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 1.6e-36 156.8 97 77.3
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.3e-35 152.9 114 68.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 3.7e-33 145.6 120 65.0
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 3.8e-30 135.6 120 60.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.0e-27 127.5 104 65.4
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.0e-23 113.2 159 45.9
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.7e-17 93.6 117 47.9
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 3.6e-12 75.9 61 65.6
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.6e-07 60.5 145 31.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.5e-07 58.9 173 30.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.0e-06 57.8 147 27.9
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.3e-06 57.4 43 69.8
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.7e-06 57.0 160 28.1
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.8e-06 55.8 160 29.4
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.6e-06 55.1 146 28.8


User provided reference genes

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