Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.3e-74 283.1 153 100.0
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 2.5e-70 268.9 153 85.6
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.7e-63 246.1 139 81.3
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.2e-63 245.7 139 81.3
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 5.0e-63 244.6 141 83.0
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 8.5e-63 243.8 137 83.2
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.5e-62 243.0 135 84.4
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 2.5e-62 242.3 141 82.3
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.5e-62 242.3 137 81.8
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 3.2e-62 241.9 137 82.5
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 4.2e-62 241.5 141 81.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.2e-62 241.5 137 81.8
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.2e-62 241.5 137 81.8
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 4.2e-62 241.5 137 81.8
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 4.2e-62 241.5 141 80.9
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 4.2e-62 241.5 141 81.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 5.5e-62 241.1 141 80.1
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 7.2e-62 240.7 137 81.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 9.4e-62 240.4 141 80.9
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 2.1e-61 239.2 139 79.1
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.1e-61 239.2 137 81.0
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 2.1e-61 239.2 137 81.8
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.7e-61 238.8 137 81.0
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 3.6e-61 238.4 141 81.6
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.6e-61 238.4 137 81.0
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.6e-61 238.4 141 79.4
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 3.6e-61 238.4 141 79.4
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.7e-61 238.0 137 80.3
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 4.7e-61 238.0 137 80.3
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 6.1e-61 237.7 139 78.4
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 6.1e-61 237.7 137 79.6
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 6.1e-61 237.7 137 79.6
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 6.1e-61 237.7 137 81.0
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 6.1e-61 237.7 141 77.3
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 8.0e-61 237.3 137 78.8
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.0e-60 236.9 141 80.9
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.0e-60 236.9 137 78.8
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 1.0e-60 236.9 141 79.4
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.4e-60 236.5 137 79.6
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.4e-60 236.5 141 80.9
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.4e-60 236.5 137 79.6
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.4e-60 236.5 137 80.3
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.4e-60 236.5 137 80.3
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.8e-60 236.1 137 78.8
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.8e-60 236.1 141 79.4
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 2.3e-60 235.7 141 79.4
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 2.3e-60 235.7 141 79.4
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 2.3e-60 235.7 141 79.4
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 2.3e-60 235.7 137 81.0
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 3.0e-60 235.3 141 79.4
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 4.0e-60 235.0 137 78.8
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 4.0e-60 235.0 141 79.4
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.0e-60 235.0 137 78.8
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 5.2e-60 234.6 141 78.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 5.2e-60 234.6 141 80.1
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 6.7e-60 234.2 141 77.3
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 6.7e-60 234.2 141 78.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.7e-60 234.2 137 78.8
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 6.7e-60 234.2 137 80.3
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 6.7e-60 234.2 141 78.7
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 8.8e-60 233.8 140 77.1
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 8.8e-60 233.8 141 79.4
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.5e-59 233.0 137 78.8
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.0e-59 232.6 137 78.8
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 2.0e-59 232.6 141 78.0
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.0e-59 232.6 141 78.0
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 2.0e-59 232.6 136 78.7
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 2.6e-59 232.3 137 78.1
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 3.3e-59 231.9 137 76.6
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 4.4e-59 231.5 139 75.5
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 5.7e-59 231.1 137 76.6
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 7.5e-59 230.7 142 78.9
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 7.5e-59 230.7 141 78.7
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 9.7e-59 230.3 137 75.9
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.3e-58 229.9 147 77.6
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.3e-58 229.9 137 75.9
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.7e-58 229.6 141 76.6
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.7e-58 229.6 141 75.9
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.7e-58 229.6 141 75.9
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.2e-58 229.2 141 78.7
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 2.8e-58 228.8 140 75.7
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 2.8e-58 228.8 138 76.1
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 3.7e-58 228.4 137 77.4
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 4.8e-58 228.0 141 78.7
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 6.3e-58 227.6 138 75.4
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 8.2e-58 227.3 165 70.3
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.1e-57 226.9 137 77.4
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.8e-57 226.1 137 78.1
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.4e-57 225.7 137 73.0
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.1e-57 225.3 137 76.6
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 9.1e-57 223.8 163 69.3
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 9.1e-57 223.8 157 70.1
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.2e-56 223.4 143 73.4
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.2e-56 223.4 136 75.0
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 1.2e-56 223.4 137 76.6
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 2.0e-56 222.6 141 75.2
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 7.7e-56 220.7 156 69.2
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 2.9e-55 218.8 141 70.9
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.9e-54 216.1 137 75.2
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 3.2e-54 215.3 137 75.2
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 3.2e-54 215.3 139 75.5
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 3.6e-53 211.8 137 71.5
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.7e-53 211.5 137 73.0
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 8.0e-53 210.7 138 72.5
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.0e-52 210.3 138 73.9
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.8e-52 209.5 139 74.1
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.5e-51 206.5 138 71.0
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.5e-51 206.5 138 71.0
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.5e-51 206.5 138 71.0
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 2.6e-51 205.7 139 72.7
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 2.6e-51 205.7 138 71.0
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 3.4e-51 205.3 138 70.3
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 7.5e-51 204.1 138 71.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 7.5e-51 204.1 138 71.0
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.3e-50 203.4 138 70.3
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.3e-50 203.4 138 70.3
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 4.1e-49 198.4 137 69.3
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.0e-48 196.1 185 54.1
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.2e-47 192.6 132 68.9
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 3.6e-45 185.3 136 69.1
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 4.0e-44 181.8 132 64.4
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 6.3e-42 174.5 111 72.1
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.1e-41 173.7 140 59.3
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 8.9e-36 154.1 94 72.3
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 2.6e-35 152.5 105 69.5
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 3.4e-35 152.1 137 55.5
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 4.4e-35 151.8 93 78.5
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 1.8e-33 146.4 139 51.8
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 2.7e-32 142.5 93 75.3
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 1.1e-30 137.1 98 66.3
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 4.0e-28 128.6 87 73.6
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 2.9e-26 122.5 137 44.5
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 4.6e-24 115.2 112 54.5
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.1e-22 110.5 112 52.7
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.5e-22 109.4 59 81.4
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.1e-12 75.9 48 68.8
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.5e-11 73.6 46 73.9


User provided reference genes

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