Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.3e-154 549.7 279 100.0
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 6.2e-104 381.3 263 73.8
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.1e-92 344.0 257 67.7
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.1e-76 290.8 208 66.8
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.5e-76 289.7 247 59.1
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 3.2e-76 289.3 245 60.4
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 7.2e-76 288.1 208 66.3
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.6e-75 287.0 252 58.3
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.1e-75 286.6 209 66.5
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 2.7e-75 286.2 208 65.4
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 6.1e-75 285.0 225 63.1
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 6.1e-75 285.0 207 66.7
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 6.1e-75 285.0 207 66.7
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 7.9e-75 284.6 274 55.5
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.9e-75 284.6 207 66.7
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.4e-74 283.9 209 66.0
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.3e-74 283.1 208 65.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.3e-74 283.1 228 62.3
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.0e-74 282.7 209 64.1
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.0e-74 282.7 209 65.6
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.9e-74 282.3 209 65.6
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 6.7e-74 281.6 228 61.8
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 6.7e-74 281.6 209 67.0
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 8.8e-74 281.2 277 55.2
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 8.8e-74 281.2 209 64.6
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.8e-74 281.2 207 65.2
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.1e-73 280.8 208 65.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.5e-73 280.4 209 65.6
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.5e-73 280.4 228 61.0
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 1.5e-73 280.4 228 61.4
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.0e-73 280.0 241 60.2
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.0e-73 280.0 207 64.7
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.0e-73 280.0 207 66.2
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 2.6e-73 279.6 209 64.6
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.3e-73 279.3 228 61.4
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 4.4e-73 278.9 210 63.8
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 7.4e-73 278.1 242 57.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 9.7e-73 277.7 209 66.0
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 9.7e-73 277.7 209 66.0
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.3e-72 277.3 209 65.1
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.7e-72 276.9 246 56.5
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.7e-72 276.9 251 57.0
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.7e-72 276.9 208 63.5
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.2e-72 276.6 221 59.7
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.2e-72 276.6 207 65.2
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.8e-72 276.2 209 63.2
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.8e-72 276.2 242 58.7
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.7e-72 275.8 204 64.2
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 3.7e-72 275.8 209 65.1
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.7e-72 275.8 223 61.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 4.8e-72 275.4 227 58.6
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.8e-72 275.4 207 66.2
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 4.8e-72 275.4 209 64.6
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 4.8e-72 275.4 218 63.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 4.8e-72 275.4 210 64.8
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 4.8e-72 275.4 246 56.1
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 6.3e-72 275.0 227 59.0
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 6.3e-72 275.0 259 56.8
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 8.2e-72 274.6 221 59.7
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.2e-72 274.6 207 65.2
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 8.2e-72 274.6 207 64.7
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 8.2e-72 274.6 259 54.1
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.4e-71 273.9 221 59.3
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.4e-71 273.9 209 64.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.8e-71 273.5 208 64.4
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 2.4e-71 273.1 218 60.6
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.4e-71 273.1 225 58.7
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.1e-71 272.7 227 59.9
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.1e-71 272.7 259 56.8
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.1e-71 272.3 209 64.1
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 4.1e-71 272.3 209 64.1
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 5.3e-71 271.9 216 61.6
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 5.3e-71 271.9 253 54.5
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 6.9e-71 271.6 227 59.5
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 6.9e-71 271.6 255 54.1
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.2e-70 270.8 204 63.7
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.2e-70 270.8 209 61.2
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.5e-70 270.4 236 58.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.0e-70 270.0 208 64.4
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 2.6e-70 269.6 203 65.5
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 2.6e-70 269.6 252 56.7
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.6e-70 269.6 209 63.2
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 3.4e-70 269.2 204 64.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 3.4e-70 269.2 208 63.5
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 4.5e-70 268.9 207 63.3
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 4.5e-70 268.9 207 64.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.2e-69 266.5 244 56.6
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.2e-69 266.5 260 53.8
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 3.8e-69 265.8 227 57.7
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 5.0e-69 265.4 204 64.7
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 6.5e-69 265.0 208 63.5
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.1e-68 264.2 258 52.7
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.1e-68 264.2 227 58.6
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.4e-68 263.8 192 65.6
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.9e-68 263.5 209 61.7
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.2e-68 262.7 209 61.2
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.5e-68 261.9 208 62.0
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 9.4e-68 261.2 204 63.7
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.2e-67 260.8 218 57.3
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 2.7e-67 259.6 259 50.6
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.6e-67 259.2 208 61.5
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.0e-66 257.7 222 55.4
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 5.2e-66 255.4 207 62.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-65 254.2 207 62.3
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 2.0e-65 253.4 208 61.1
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.0e-65 253.4 227 56.4
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 7.4e-65 251.5 264 52.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 9.7e-65 251.1 204 61.3
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.2e-62 244.2 181 61.9
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 2.6e-62 243.0 184 64.7
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.5e-60 236.5 180 63.3
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 2.0e-57 226.9 207 54.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.4e-57 225.7 218 55.5
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 7.5e-57 224.9 181 59.1
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 3.1e-55 219.5 228 50.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.5e-54 215.7 178 60.1
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 4.2e-52 209.1 187 54.0
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 8.0e-51 204.9 159 64.2
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.5e-49 200.7 228 46.1
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 7.5e-49 198.4 204 49.5
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.1e-47 194.5 247 41.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 5.9e-46 188.7 209 48.3
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 8.0e-43 178.3 233 38.2
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.6e-41 173.3 155 58.1
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 4.9e-40 169.1 153 55.6
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.1e-39 166.0 136 64.0
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 9.2e-39 164.9 216 42.1
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 2.3e-37 160.2 119 59.7
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 9.8e-33 144.8 109 65.1
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 3.4e-25 119.8 83 71.1
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 7.8e-22 108.6 123 52.0
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.2e-19 101.3 130 43.8
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.7e-16 90.9 88 54.5
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.7e-16 90.9 86 50.0
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 4.9e-16 89.4 110 40.9
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 7.3e-12 75.5 58 65.5
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 8.9e-10 68.6 225 29.3
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.7e-08 64.3 40 75.0
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.6e-06 57.8 41 68.3


User provided reference genes

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