Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 5.8e-25 117.1 74 100.0
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 1.9e-15 85.5 76 84.2
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 3.0e-13 78.2 77 74.0
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 2.8e-11 71.6 39 94.9
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.1e-10 68.2 75 60.0
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 3.1e-10 68.2 38 86.8
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 5.3e-10 67.4 74 58.1
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 9.0e-10 66.6 38 86.8
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.2e-09 66.2 69 55.1
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 1.2e-09 66.2 71 63.4
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 2.0e-09 65.5 75 54.7
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 2.0e-09 65.5 50 70.0
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 3.4e-09 64.7 74 56.8
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 3.4e-09 64.7 35 88.6
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 4.5e-09 64.3 38 84.2
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 5.8e-09 63.9 75 64.0
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 5.8e-09 63.9 38 84.2
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 7.6e-09 63.5 72 63.9
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 7.6e-09 63.5 38 84.2
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 7.6e-09 63.5 38 84.2
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 7.6e-09 63.5 38 84.2
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 7.6e-09 63.5 38 84.2
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 7.6e-09 63.5 38 84.2
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 7.6e-09 63.5 38 84.2
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 7.6e-09 63.5 70 62.9
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 1.0e-08 63.2 74 56.8
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 1.0e-08 63.2 38 84.2
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 1.3e-08 62.8 75 56.0
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.3e-08 62.8 75 66.7
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 1.7e-08 62.4 38 81.6
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 2.2e-08 62.0 38 81.6
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 2.2e-08 62.0 74 55.4
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 2.2e-08 62.0 74 54.1
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.2e-08 62.0 68 57.4
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.2e-08 62.0 68 57.4
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 2.9e-08 61.6 81 50.6
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 2.9e-08 61.6 38 81.6
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 2.9e-08 61.6 38 81.6
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 2.9e-08 61.6 70 54.3
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 2.9e-08 61.6 68 64.7
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.9e-08 61.6 39 84.6
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.9e-08 61.6 39 84.6
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 3.8e-08 61.2 64 60.9
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 3.8e-08 61.2 68 57.4
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 3.8e-08 61.2 73 60.3
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 3.8e-08 61.2 77 59.7
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 4.9e-08 60.8 75 54.7
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.9e-08 60.8 38 86.8
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.9e-08 60.8 38 86.8
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.9e-08 60.8 38 86.8
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 84.2
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 81.6
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 6.5e-08 60.5 52 71.2
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 6.5e-08 60.5 55 74.5
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 86.8
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 6.5e-08 60.5 37 86.5
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.1e-07 59.7 38 84.2
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.4e-07 59.3 39 82.1
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 1.4e-07 59.3 58 58.6
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.4e-07 59.3 71 62.0
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.4e-07 59.3 65 61.5
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 1.4e-07 59.3 37 83.8
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.4e-07 59.3 67 56.7
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 1.9e-07 58.9 34 82.4
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 1.9e-07 58.9 37 86.5
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 2.5e-07 58.5 74 54.1
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 2.5e-07 58.5 58 58.6
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 2.5e-07 58.5 74 62.2
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 2.5e-07 58.5 78 65.4
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 2.5e-07 58.5 32 93.8
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 2.5e-07 58.5 38 84.2
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 2.5e-07 58.5 74 51.4
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 3.2e-07 58.2 60 56.7
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 3.2e-07 58.2 31 93.5
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 3.2e-07 58.2 71 57.7
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 4.2e-07 57.8 58 56.9
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 4.2e-07 57.8 74 62.2
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 4.2e-07 57.8 66 57.6
Phvul.002G296000 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 4.2e-07 57.8 74 50.0
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 5.5e-07 57.4 32 90.6
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 5.5e-07 57.4 76 67.1
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.5e-07 57.4 38 78.9
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 5.5e-07 57.4 51 72.5
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 5.5e-07 57.4 66 65.2
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 7.1e-07 57.0 68 54.4
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 7.1e-07 57.0 60 60.0
Glyma.08G021100 Glycine max HOM05D001384 ORTHO05D001215 7.1e-07 57.0 57 57.9
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 7.1e-07 57.0 38 73.7
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 9.3e-07 56.6 65 60.0
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.2e-06 56.2 68 55.9
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 77 55.8
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.2e-06 56.2 77 55.8
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.2e-06 56.2 64 53.1
Medtr8g099245 Medicago truncatula HOM05D001384 ORTHO05D001215 1.2e-06 56.2 65 50.8
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-06 55.8 57 57.9
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.6e-06 55.8 57 57.9
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 1.6e-06 55.8 68 60.3
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.6e-06 55.8 74 54.1
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.6e-06 55.8 68 54.4
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.1e-06 55.5 74 52.7
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 2.1e-06 55.5 37 78.4
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.7e-06 55.1 77 62.3
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.7e-06 55.1 74 52.7
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 2.7e-06 55.1 66 56.1
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 2.7e-06 55.1 65 55.4
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 2.7e-06 55.1 65 55.4
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 3.5e-06 54.7 65 49.2
Glyma.05G214851 Glycine max HOM05D001384 ORTHO05D001215 3.5e-06 54.7 57 56.1
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 3.5e-06 54.7 57 54.4
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 4.6e-06 54.3 60 56.7
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 4.6e-06 54.3 61 57.4
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 4.6e-06 54.3 63 54.0
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.6e-06 54.3 68 51.5
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.6e-06 54.3 71 54.9
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.6e-06 54.3 68 51.5
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 4.6e-06 54.3 68 51.5
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 4.6e-06 54.3 65 55.4
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 4.6e-06 54.3 63 63.5
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 4.6e-06 54.3 69 52.2
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 4.6e-06 54.3 63 54.0
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 4.6e-06 54.3 63 54.0
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 4.6e-06 54.3 73 53.4
Cc02_g38960 Coffea canephora HOM05D001384 ORTHO05D001215 6.0e-06 53.9 65 53.8
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 6.0e-06 53.9 75 49.3
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 7.9e-06 53.5 69 53.6
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 7.9e-06 53.5 57 56.1
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 7.9e-06 53.5 60 55.0


User provided reference genes

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