Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0261000 Oryza sativa ssp. japonica HOM05D058753 ORTHO05D006123 1.8e-145 519.6 346 100.0
Zm00001eb237910 Zea mays HOM05D058753 ORTHO05D006123 8.1e-69 265.0 208 68.3
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 8.5e-18 95.5 174 33.3
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 9.4e-17 92.0 159 31.4
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.6e-16 90.1 198 29.8
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.4e-15 88.2 169 31.4
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.1e-14 85.1 198 28.8
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.0e-14 84.3 200 31.0
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 9.7e-14 82.0 173 28.3
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.7e-13 81.3 202 29.7
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.8e-13 79.7 172 27.9
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 8.2e-13 79.0 175 27.4
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.8e-12 77.8 172 27.3
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 1.8e-12 77.8 169 29.6
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.4e-12 77.4 152 27.0
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 2.4e-12 77.4 156 28.2
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 2.4e-12 77.4 156 28.2
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.4e-12 77.4 152 27.0
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 5.3e-12 76.3 152 26.3
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 5.3e-12 76.3 152 26.3
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.9e-12 75.9 162 25.9
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 6.9e-12 75.9 179 29.1
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 9.1e-12 75.5 162 27.2
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.1e-12 75.5 180 27.2
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.1e-12 75.5 180 26.7
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 9.1e-12 75.5 175 26.3
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 9.1e-12 75.5 181 29.3
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.2e-11 75.1 180 26.7
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 1.2e-11 75.1 153 30.1
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 2.6e-11 73.9 173 26.0
BcaC07g38874 Brassica carinata HOM05D002137 ORTHO05D002144 4.5e-11 73.2 184 29.3
BraA08t35012Z Brassica rapa HOM05D002137 ORTHO05D002144 5.9e-11 72.8 184 29.3
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 7.7e-11 72.4 155 27.7
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 7.7e-11 72.4 178 29.8
SalBow6G2279 Salvia bowleyana HOM05D002137 ORTHO05D002144 7.7e-11 72.4 191 26.2
SalBow6G5101 Salvia bowleyana HOM05D002137 ORTHO05D002144 7.7e-11 72.4 191 26.2
A08p30810 Brassica napus HOM05D002137 ORTHO05D002144 1.0e-10 72.0 184 28.8
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.0e-10 72.0 154 25.3
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.3e-10 71.6 152 28.3
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.2e-10 70.9 174 26.4
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.2e-10 70.9 174 24.7
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 2.2e-10 70.9 181 30.4
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 2.2e-10 70.9 159 24.5
C08p18110 Brassica napus HOM05D002137 ORTHO05D002144 3.8e-10 70.1 176 29.0
BolC8t49445H Brassica oleracea HOM05D002137 ORTHO05D002144 3.8e-10 70.1 176 29.0
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 3.8e-10 70.1 184 28.3
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 3.8e-10 70.1 176 30.1
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 3.8e-10 70.1 169 28.4
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.5e-10 69.3 200 26.0
BcaB03g12990 Brassica carinata HOM05D002137 ORTHO05D002144 8.5e-10 68.9 186 29.0
BcaB07g34019 Brassica carinata HOM05D002137 ORTHO05D002144 8.5e-10 68.9 184 27.2
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.1e-09 68.6 185 31.4
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.1e-09 68.6 178 30.9
Sp1g15730 Schrenkiella parvula HOM05D002137 ORTHO05D002144 1.1e-09 68.6 184 28.8
Zm00001eb160190 Zea mays HOM05D002137 ORTHO05D002144 1.1e-09 68.6 181 35.9
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.4e-09 68.2 188 26.1
SGA_v2.0_scaffold68G22917 Striga asiatica HOM05D002137 ORTHO05D002144 1.4e-09 68.2 190 25.8
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.5e-09 67.4 173 26.6
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 3.2e-09 67.0 178 29.8
Aa31LG7G2430 Aethionema arabicum HOM05D002137 ORTHO05D002144 4.2e-09 66.6 186 26.3
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 4.2e-09 66.6 204 27.5
PGR102G2531 Punica granatum HOM05D002137 ORTHO05D002144 4.2e-09 66.6 193 26.4
C05p16010 Brassica napus HOM05D002137 ORTHO05D002144 5.5e-09 66.2 186 28.0
BolC5t30303H Brassica oleracea HOM05D002137 ORTHO05D002144 5.5e-09 66.2 186 28.0
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 5.5e-09 66.2 188 26.1
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 5.5e-09 66.2 167 29.9
CAN.G1389.23 Capsicum annuum HOM05D002137 ORTHO05D002144 7.2e-09 65.9 195 24.1
Os01g0574800 Oryza sativa ssp. japonica HOM05D002137 ORTHO05D002144 9.4e-09 65.5 157 33.1
THA.LOC104813947 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 9.4e-09 65.5 181 28.7
CSS0036942 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 1.2e-08 65.1 207 25.6
SGA_v2.0_scaffold20G09222 Striga asiatica HOM05D002137 ORTHO05D002144 1.2e-08 65.1 201 30.8
AT1G17620 Arabidopsis thaliana HOM05D002137 ORTHO05D002144 1.6e-08 64.7 187 27.3
BcaC05g25683 Brassica carinata HOM05D002137 ORTHO05D002144 1.6e-08 64.7 186 27.4
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.6e-08 64.7 156 23.1
Sc23g0005630 Simmondsia chinensis HOM05D002137 ORTHO05D002144 2.1e-08 64.3 222 27.5
unitig_0.g2874 Utricularia gibba HOM05D002137 ORTHO05D002144 2.1e-08 64.3 206 28.6
Zm00001eb337830 Zea mays HOM05D002137 ORTHO05D002144 2.1e-08 64.3 151 30.5
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 3.6e-08 63.5 184 27.2
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 3.6e-08 63.5 195 27.2
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 4.7e-08 63.2 178 27.5
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 4.7e-08 63.2 202 25.7
vmacro00139 Vaccinium macrocarpon HOM05D002137 ORTHO05D002144 4.7e-08 63.2 188 26.6
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 4.7e-08 63.2 125 32.8
Lj3g0017057 Lotus japonicus HOM05D002137 ORTHO05D002144 6.1e-08 62.8 177 28.8
SGA_v2.0_scaffold127G34052 Striga asiatica HOM05D002137 ORTHO05D002144 6.1e-08 62.8 182 25.8
Carub.0001s1736 Capsella rubella HOM05D002137 ORTHO05D002144 7.9e-08 62.4 188 26.1
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 7.9e-08 62.4 180 27.2
A06p13520 Brassica napus HOM05D002137 ORTHO05D002144 1.0e-07 62.0 184 25.5
BraA06t24504Z Brassica rapa HOM05D002137 ORTHO05D002144 1.0e-07 62.0 184 25.5
Gorai.009G141800 Gossypium raimondii HOM05D002137 ORTHO05D002144 1.0e-07 62.0 185 26.5
Hund19448 Selenicereus undatus HOM05D002137 ORTHO05D002144 1.0e-07 62.0 197 29.9
Nn6g35491 Nelumbo nucifera HOM05D002137 ORTHO05D002144 1.4e-07 61.6 192 27.1
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.4e-07 61.6 149 23.5
Zm00001eb357160 Zea mays HOM05D002137 ORTHO05D002144 1.4e-07 61.6 156 32.1
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 2.3e-07 60.8 174 28.2
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.3e-07 60.8 178 25.3
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 2.3e-07 60.8 205 24.4
Migut.I01027 Erythranthe guttata HOM05D002137 ORTHO05D002144 2.3e-07 60.8 187 23.5
Gohir.A05G135400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 2.3e-07 60.8 185 25.9
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 3.0e-07 60.5 204 25.5
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 3.0e-07 60.5 185 25.9
Lsat_1_v5_gn_0_11181 Lactuca sativa HOM05D002137 ORTHO05D002144 3.0e-07 60.5 186 26.9
MSTRG.4769 Avicennia marina HOM05D002137 ORTHO05D002144 3.9e-07 60.1 171 24.6
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 3.9e-07 60.1 173 26.0
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.9e-07 60.1 175 29.7
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.9e-07 60.1 154 28.6
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 5.1e-07 59.7 180 23.3
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 8.8e-07 58.9 177 26.6
Zm00001eb150110 Zea mays HOM05D000973 ORTHO05D000652 8.8e-07 58.9 158 33.5
ATR0026G055 Amborella trichopoda HOM05D002137 ORTHO05D002144 1.1e-06 58.5 172 27.3
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 1.1e-06 58.5 186 26.9
Rhsim11G0043800 Rhododendron simsii HOM05D002137 ORTHO05D002144 1.1e-06 58.5 193 24.4
ECA234G3777 Erigeron canadensis HOM05D002137 ORTHO05D002144 1.5e-06 58.2 186 25.8
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.5e-06 58.2 135 31.1
ECA232G0334 Erigeron canadensis HOM05D002137 ORTHO05D002144 2.0e-06 57.8 199 25.1
HanXRQChr09g0276481 Helianthus annuus HOM05D002137 ORTHO05D002144 2.0e-06 57.8 185 25.4
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.0e-06 57.8 178 28.7
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.0e-06 57.8 179 26.8
Glyma.13G349900 Glycine max HOM05D002137 ORTHO05D002144 2.6e-06 57.4 184 27.7
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 2.6e-06 57.4 179 26.3
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 2.6e-06 57.4 197 28.9
CSS0050252 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 3.3e-06 57.0 182 26.4
Sed0014294 Sechium edule HOM05D002137 ORTHO05D002144 3.3e-06 57.0 191 25.1
THA.LOC104811311 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 3.3e-06 57.0 187 28.3
Haze_15956 Corylus avellana HOM05D002137 ORTHO05D002144 4.4e-06 56.6 176 25.0
Gohir.D06G086700 Gossypium hirsutum HOM05D002137 ORTHO05D002144 4.4e-06 56.6 196 27.0
Glyma.15G024400 Glycine max HOM05D002137 ORTHO05D002144 5.7e-06 56.2 189 25.9
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 5.7e-06 56.2 179 26.8
Gohir.D10G060200 Gossypium hirsutum HOM05D002137 ORTHO05D002144 7.4e-06 55.8 191 27.2
Gorai.011G064400 Gossypium raimondii HOM05D002137 ORTHO05D002144 7.4e-06 55.8 191 27.2
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 9.7e-06 55.5 172 26.2
ClCG07G013740 Citrullus lanatus HOM05D002137 ORTHO05D002144 9.7e-06 55.5 184 23.4


User provided reference genes

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