Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.6e-228 795.0 395 100.0
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 4.8e-211 737.6 401 92.5
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 3.2e-186 655.2 395 81.5
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 7.8e-169 597.4 350 80.0
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 6.2e-166 587.8 353 79.6
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 6.9e-165 584.3 345 79.1
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 4.4e-164 581.6 350 79.7
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 4.4e-164 581.6 350 78.3
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 4.4e-164 581.6 358 76.5
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 5.8e-164 581.3 348 78.4
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 9.9e-164 580.5 355 76.6
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 9.9e-164 580.5 347 78.4
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 1.3e-163 580.1 350 78.3
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 2.2e-163 579.3 370 74.6
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.2e-163 579.3 348 78.2
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 2.9e-163 578.9 346 78.3
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 4.9e-163 578.2 350 77.4
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.1e-162 577.0 348 78.2
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 1.1e-162 577.0 349 78.5
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.1e-162 577.0 349 77.7
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.4e-162 576.6 351 78.6
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.4e-162 575.9 358 76.3
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 2.4e-162 575.9 349 77.9
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.2e-162 575.5 348 77.6
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 3.2e-162 575.5 349 76.2
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 5.4e-162 574.7 355 76.1
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 5.4e-162 574.7 363 75.5
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 5.4e-162 574.7 353 77.9
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 5.4e-162 574.7 350 78.9
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 7.1e-162 574.3 351 76.9
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 7.1e-162 574.3 350 77.4
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 7.1e-162 574.3 345 78.6
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 7.1e-162 574.3 346 77.7
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 9.3e-162 573.9 352 77.0
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 9.3e-162 573.9 348 78.2
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 9.3e-162 573.9 348 76.7
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 9.3e-162 573.9 350 77.1
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 2.1e-161 572.8 349 78.2
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.1e-161 572.8 348 77.6
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 2.7e-161 572.4 358 76.3
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 4.6e-161 571.6 330 80.6
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 6.0e-161 571.2 352 76.7
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.0e-160 570.5 350 76.9
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.3e-160 570.1 351 76.6
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 1.3e-160 570.1 349 77.4
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 2.3e-160 569.3 331 79.8
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 3.0e-160 568.9 350 76.9
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 3.0e-160 568.9 330 80.3
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 3.9e-160 568.5 350 77.4
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 5.1e-160 568.2 364 75.5
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 5.1e-160 568.2 349 77.9
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 6.6e-160 567.8 332 79.8
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 1.5e-159 566.6 353 76.2
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 1.9e-159 566.2 346 76.9
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.9e-159 566.2 366 74.0
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 2.5e-159 565.8 350 77.4
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 2.5e-159 565.8 332 79.5
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 2.5e-159 565.8 350 76.0
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 4.3e-159 565.1 402 71.1
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 4.3e-159 565.1 366 74.9
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 5.6e-159 564.7 365 74.2
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 1.3e-158 563.5 353 76.5
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 2.1e-158 562.8 349 77.4
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 2.8e-158 562.4 369 74.3
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 2.8e-158 562.4 330 79.7
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 2.8e-158 562.4 346 76.6
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 3.6e-158 562.0 359 75.2
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 3.6e-158 562.0 360 75.8
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 3.6e-158 562.0 327 81.3
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 4.8e-158 561.6 352 75.9
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.4e-157 560.1 349 76.8
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 1.4e-157 560.1 369 74.0
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 1.4e-157 560.1 350 76.3
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 1.4e-157 560.1 371 72.2
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 1.4e-157 560.1 365 74.2
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 1.4e-157 560.1 350 76.6
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.8e-157 559.7 352 75.3
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 5.3e-157 558.1 352 76.1
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 6.9e-157 557.8 330 79.1
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 9.0e-157 557.4 349 75.4
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 1.5e-156 556.6 354 74.0
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.5e-156 556.6 350 75.1
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 1.5e-156 556.6 374 71.1
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 3.4e-156 555.4 349 75.4
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 4.5e-156 555.1 330 78.8
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 4.9e-155 551.6 352 74.7
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.4e-154 550.1 330 77.6
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 4.2e-154 548.5 346 74.3
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.3e-152 543.5 346 74.0
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.8e-152 543.1 327 77.4
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.9e-152 542.0 346 74.0
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 7.4e-151 537.7 363 71.3
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 7.4e-151 537.7 415 65.1
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 2.1e-150 536.2 318 78.9
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 2.1e-150 536.2 346 73.7
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 1.4e-149 533.5 346 72.3
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 1.2e-145 520.4 352 72.2
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 2.7e-145 519.2 329 75.1
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 2.7e-145 519.2 329 74.8
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 7.9e-145 517.7 330 72.7
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 2.4e-141 506.1 351 68.9
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 4.5e-140 501.9 365 67.1
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 1.4e-138 496.9 335 71.6
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 1.2e-132 477.2 333 66.1
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 3.3e-127 459.1 344 67.7
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 3.9e-120 435.6 329 62.0
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 1.1e-119 434.1 355 62.0
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.3e-118 430.6 345 62.3
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 6.3e-118 428.3 357 60.8
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 2.0e-111 406.8 376 55.1
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 6.3e-110 401.7 328 58.2
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.0e-104 382.9 327 58.1
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 3.0e-104 382.9 230 76.5
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 8.8e-104 381.3 275 66.9
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 8.2e-102 374.8 245 72.7
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 4.1e-101 372.5 238 73.9
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 4.5e-100 369.0 231 72.7
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.5e-98 364.0 378 49.7
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 6.6e-67 258.8 287 45.3
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.7e-62 244.2 208 59.6
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 6.4e-62 242.3 179 66.5
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 2.4e-61 240.4 165 69.1
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 3.8e-46 189.9 159 61.6
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.1e-44 184.1 131 68.7
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 1.1e-13 82.0 89 48.3
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 1.1e-13 82.0 89 48.3
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 3.2e-13 80.5 55 74.5
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 8.2e-09 65.9 35 77.1


User provided reference genes

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