Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0247100 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 5.0e-61 237.7 126 100.0
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 5.8e-25 117.9 136 60.3
Zm00001eb204490 Zea mays HOM05D002172 ORTHO05D002167 1.8e-18 96.3 140 50.7
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 2.3e-13 79.3 90 55.6
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 1.8e-10 69.7 83 56.6
Psat5g240960 Pisum sativum HOM05D002172 ORTHO05D002167 4.0e-10 68.6 74 55.4
FAN11G3061 Fragaria x ananassa HOM05D002172 ORTHO05D002167 1.5e-09 66.6 78 55.1
FAN16G0639 Fragaria x ananassa HOM05D002172 ORTHO05D002167 1.5e-09 66.6 78 55.1
FAN25G1327 Fragaria x ananassa HOM05D002172 ORTHO05D002167 1.5e-09 66.6 78 55.1
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 1.5e-09 66.6 86 53.5
FAN21G2999 Fragaria x ananassa HOM05D002172 ORTHO05D002167 3.4e-09 65.5 82 50.0
TWI59G1477 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 3.4e-09 65.5 104 49.0
Eucgr.F03286 Eucalyptus grandis HOM05D002172 ORTHO05D002167 9.9e-09 63.9 68 57.4
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 9.9e-09 63.9 58 63.8
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 9.9e-09 63.9 102 42.2
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 1.7e-08 63.2 74 51.4
RcHm_v2.0_Chr5g0031811 Rosa chinensis HOM05D002172 ORTHO05D002167 2.2e-08 62.8 78 51.3
SGA_v2.0_scaffold73G24212 Striga asiatica HOM05D002172 ORTHO05D002167 2.2e-08 62.8 149 36.9
CiPaw.12G115600 Carya illinoinensis HOM05D002172 ORTHO05D002167 3.8e-08 62.0 63 60.3
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 3.8e-08 62.0 88 45.5
Medtr2g078370 Medicago truncatula HOM05D002172 ORTHO05D002167 4.9e-08 61.6 58 60.3
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 4.9e-08 61.6 106 44.3
Aqoxy1G02211 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 6.4e-08 61.2 62 58.1
Duzib213G0791 Durio zibethinus HOM05D002172 ORTHO05D002167 6.4e-08 61.2 78 51.3
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 8.4e-08 60.8 59 59.3
TAR626G1972 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.1e-07 60.5 113 43.4
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.4e-07 60.1 92 50.0
QL08p027653 Quercus lobata HOM05D002172 ORTHO05D002167 1.4e-07 60.1 62 58.1
GSVIVG01020658001 Vitis vinifera HOM05D002172 ORTHO05D002167 1.4e-07 60.1 113 40.7
Lj3g0023616 Lotus japonicus HOM05D002172 ORTHO05D002167 1.9e-07 59.7 60 56.7
Cfa019613 Carpinus fangiana HOM05D002172 ORTHO05D002167 2.4e-07 59.3 105 44.8
Thecc.07G102500 Theobroma cacao HOM05D002172 ORTHO05D002167 2.4e-07 59.3 76 52.6
Potri.013G124400 Populus trichocarpa HOM05D002172 ORTHO05D002167 3.2e-07 58.9 74 48.6
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 4.2e-07 58.5 109 39.4
Cc05_g08000 Coffea canephora HOM05D002172 ORTHO05D002167 5.5e-07 58.2 108 43.5
Haze_09367 Corylus avellana HOM05D002172 ORTHO05D002167 5.5e-07 58.2 107 43.0
MD11G1258200 Malus domestica HOM05D002172 ORTHO05D002167 5.5e-07 58.2 68 55.9
VMungo1127G0198 Vigna mungo HOM05D002172 ORTHO05D002167 5.5e-07 58.2 106 44.3
CAN.G1543.10 Capsicum annuum HOM05D002172 ORTHO05D002167 7.1e-07 57.8 97 42.3
Duzib170G0027 Durio zibethinus HOM05D002172 ORTHO05D002167 7.1e-07 57.8 74 52.7
Gohir.A01G059300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 7.1e-07 57.8 74 51.4
Gorai.002G064900 Gossypium raimondii HOM05D002172 ORTHO05D002167 7.1e-07 57.8 74 51.4
Medtr2g090900 Medicago truncatula HOM05D002172 ORTHO05D002167 7.1e-07 57.8 59 57.6
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 7.1e-07 57.8 111 43.2
Eucgr.K01085 Eucalyptus grandis HOM05D002172 ORTHO05D002167 9.3e-07 57.4 99 43.4
Gohir.D01G045300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 9.3e-07 57.4 74 51.4
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 9.3e-07 57.4 82 48.8
Gorai.013G172500 Gossypium raimondii HOM05D002172 ORTHO05D002167 1.2e-06 57.0 128 37.5
Potri.019G091900 Populus trichocarpa HOM05D002172 ORTHO05D002167 1.2e-06 57.0 135 36.3
PGR031G3645 Punica granatum HOM05D002172 ORTHO05D002167 1.2e-06 57.0 132 36.4
SalBow8G2046 Salvia bowleyana HOM05D002172 ORTHO05D002167 1.2e-06 57.0 96 44.8
SalBow8G3145 Salvia bowleyana HOM05D002172 ORTHO05D002167 1.2e-06 57.0 96 44.8
Thecc.01G241600 Theobroma cacao HOM05D002172 ORTHO05D002167 1.2e-06 57.0 116 39.7
C06p25130 Brassica napus HOM05D002172 ORTHO05D002167 1.6e-06 56.6 82 50.0
BolC6t37671H Brassica oleracea HOM05D002172 ORTHO05D002167 1.6e-06 56.6 82 50.0
Migut.M00759 Erythranthe guttata HOM05D002172 ORTHO05D002167 1.6e-06 56.6 97 41.2
Gohir.A13G148000 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.6e-06 56.6 128 36.7
Gohir.D13G152600 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.6e-06 56.6 128 37.5
CARHR168470 Cardamine hirsuta HOM05D002172 ORTHO05D002167 2.1e-06 56.2 58 56.9
Cfa014691 Carpinus fangiana HOM05D002172 ORTHO05D002167 2.1e-06 56.2 91 44.0
Glyma.13G272500 Glycine max HOM05D002172 ORTHO05D002167 2.1e-06 56.2 58 58.6
Lj3g0019556 Lotus japonicus HOM05D002172 ORTHO05D002167 2.1e-06 56.2 104 43.3
MBI07_g17037_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 2.1e-06 56.2 114 42.1
THA.LOC104822612 Tarenaya hassleriana HOM05D002172 ORTHO05D002167 2.1e-06 56.2 100 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3217 Anthoceros agrestis HOM05D001917 ORTHO05D002167 2.7e-06 55.8 67 47.8
AT3G58120 Arabidopsis thaliana HOM05D002172 ORTHO05D002167 2.7e-06 55.8 106 42.5
arahy.Tifrunner.gnm1.ann1.HW01DK Arachis hypogaea HOM05D002172 ORTHO05D002167 2.7e-06 55.8 57 59.6
arahy.Tifrunner.gnm1.ann1.ZES6QF Arachis hypogaea HOM05D002172 ORTHO05D002167 2.7e-06 55.8 57 59.6
MSTRG.14946 Avicennia marina HOM05D002172 ORTHO05D002167 2.7e-06 55.8 95 43.2
Carub.0005s2497 Capsella rubella HOM05D002172 ORTHO05D002167 2.7e-06 55.8 106 42.5
FvH4_6g26970 Fragaria vesca HOM05D002172 ORTHO05D002167 2.7e-06 55.8 118 40.7
FAN14G4401 Fragaria x ananassa HOM05D002172 ORTHO05D002167 2.7e-06 55.8 118 40.7
Nn1g06336 Nelumbo nucifera HOM05D002172 ORTHO05D002167 2.7e-06 55.8 101 43.6
Phvul.011G116800 Phaseolus vulgaris HOM05D002172 ORTHO05D002167 2.7e-06 55.8 109 40.4
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 2.7e-06 55.8 65 53.8
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 2.7e-06 55.8 127 37.8
A07p23890 Brassica napus HOM05D002172 ORTHO05D002167 3.5e-06 55.5 82 48.8
BraA07t30042Z Brassica rapa HOM05D002172 ORTHO05D002167 3.5e-06 55.5 82 48.8
CARHR137430 Cardamine hirsuta HOM05D002172 ORTHO05D002167 3.5e-06 55.5 95 45.3
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 3.5e-06 55.5 102 43.1
SGA_v2.0_scaffold34G13764 Striga asiatica HOM05D002172 ORTHO05D002167 3.5e-06 55.5 100 44.0
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 3.5e-06 55.5 75 49.3
Duzib268G0924 Durio zibethinus HOM05D002172 ORTHO05D002167 4.6e-06 55.1 74 51.4
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 4.6e-06 55.1 108 39.8
PSO541G5259 Papaver somniferum HOM05D002172 ORTHO05D002167 4.6e-06 55.1 84 46.4
PSO675G6960 Papaver somniferum HOM05D002172 ORTHO05D002167 4.6e-06 55.1 84 46.4
GSVIVG01014246001 Vitis vinifera HOM05D002172 ORTHO05D002167 4.6e-06 55.1 84 46.4
AL4G40800 Arabidopsis lyrata HOM05D002172 ORTHO05D002167 6.0e-06 54.7 110 40.0
Lalb_Chr19g0135001 Lupinus albus HOM05D002172 ORTHO05D002167 6.0e-06 54.7 58 53.4
Prupe.4G172000 Prunus persica HOM05D002172 ORTHO05D002167 6.0e-06 54.7 122 40.2
AL5G39810 Arabidopsis lyrata HOM05D002172 ORTHO05D002167 7.9e-06 54.3 84 50.0
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 7.9e-06 54.3 108 39.8
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 7.9e-06 54.3 108 39.8
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 7.9e-06 54.3 108 39.8
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 7.9e-06 54.3 131 34.4
CANSAT64G0015 Cannabis sativa HOM05D002172 ORTHO05D002167 7.9e-06 54.3 135 35.6
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 7.9e-06 54.3 60 55.0
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 7.9e-06 54.3 74 51.4
Lalb_Chr03g0029801 Lupinus albus HOM05D002172 ORTHO05D002167 7.9e-06 54.3 58 55.2
Sopen07g027410 Solanum pennellii HOM05D002172 ORTHO05D002167 7.9e-06 54.3 107 39.3


User provided reference genes

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