Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 7.9e-177 623.6 308 100.0
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.0e-128 461.8 222 98.6
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 3.3e-114 415.6 222 86.9
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 4.2e-101 372.1 232 76.3
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 3.0e-99 365.9 230 73.0
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.9e-99 365.5 230 73.0
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 3.9e-99 365.5 230 74.3
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.7e-99 364.8 230 73.0
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.1e-98 364.0 230 73.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.5e-98 363.6 230 73.0
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.5e-98 363.6 230 72.6
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.9e-98 363.2 226 75.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 4.3e-98 362.1 230 74.8
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 9.6e-98 360.9 230 73.9
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.1e-97 359.8 230 70.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.8e-97 358.6 230 71.3
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 4.8e-97 358.6 230 73.0
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 6.2e-97 358.2 230 72.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.4e-96 357.1 229 72.5
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.8e-96 356.7 231 72.3
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.8e-96 356.7 228 72.4
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.8e-96 356.7 230 72.2
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.8e-96 356.7 228 72.4
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 2.4e-96 356.3 228 71.1
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 5.3e-96 355.1 230 72.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 5.3e-96 355.1 230 72.2
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 6.9e-96 354.8 230 72.6
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.5e-95 352.1 231 71.4
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.5e-95 352.1 230 70.9
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.5e-95 352.1 231 71.0
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 4.5e-95 352.1 231 71.0
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 7.6e-95 351.3 231 70.6
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 7.6e-95 351.3 231 71.0
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 7.6e-95 351.3 231 70.1
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 9.9e-95 350.9 230 69.6
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 9.9e-95 350.9 230 70.0
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.3e-94 350.5 230 70.4
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.3e-94 350.5 230 70.4
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.3e-94 350.5 237 70.5
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.7e-94 350.1 231 72.7
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.7e-94 350.1 230 71.7
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.9e-94 349.4 231 68.8
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.9e-94 349.4 231 72.3
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 2.9e-94 349.4 230 69.1
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 2.9e-94 349.4 222 72.1
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.8e-94 349.0 222 71.6
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.8e-94 349.0 222 71.6
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.8e-94 349.0 222 72.5
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 3.8e-94 349.0 222 73.0
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 3.8e-94 349.0 230 70.9
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 1.1e-93 347.4 275 63.6
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.4e-93 347.1 222 72.5
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.4e-93 347.1 229 72.1
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.9e-93 346.7 230 70.9
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 5.5e-93 345.1 230 69.6
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 7.1e-93 344.7 245 67.8
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 9.3e-93 344.4 231 69.3
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 2.7e-92 342.8 231 68.0
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 3.5e-92 342.4 230 69.1
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 3.5e-92 342.4 230 69.1
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 3.5e-92 342.4 225 69.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 4.6e-92 342.0 230 68.7
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 4.6e-92 342.0 230 69.1
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 4.6e-92 342.0 230 69.1
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 4.6e-92 342.0 230 69.1
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.6e-92 342.0 229 69.0
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 6.0e-92 341.7 230 69.6
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.0e-91 340.9 230 69.1
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.5e-90 337.0 257 64.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.5e-90 337.0 231 68.0
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.9e-90 336.7 229 67.7
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.9e-90 336.7 230 68.7
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.5e-90 336.3 226 68.1
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 4.3e-90 335.5 225 68.4
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.3e-89 334.0 230 68.3
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.3e-89 334.0 222 71.2
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 8.2e-89 331.3 229 69.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.4e-88 330.5 259 62.2
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.5e-87 327.0 222 71.2
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 5.8e-87 325.1 224 69.6
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.0e-86 324.3 231 66.7
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 3.8e-86 322.4 230 66.1
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.1e-85 320.9 230 65.7
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 7.1e-85 318.2 230 67.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 3.0e-83 312.8 265 58.9
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 8.7e-83 311.2 260 59.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.9e-82 310.1 263 60.5
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.6e-81 307.0 230 63.9
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 3.4e-79 299.3 215 66.5
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.8e-78 295.8 229 62.0
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.8e-75 287.0 192 68.8
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 8.8e-75 284.6 259 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.5e-74 283.1 258 53.5
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 5.7e-74 282.0 266 52.6
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 5.7e-74 282.0 231 61.0
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.8e-72 276.9 228 60.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.8e-72 276.9 259 55.2
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.0e-70 271.2 250 52.4
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.0e-70 268.9 183 69.4
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.4e-69 267.3 196 61.7
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.6e-68 263.8 169 72.2
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 3.6e-68 262.7 296 45.9
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 3.1e-64 249.6 170 65.3
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.9e-61 240.4 125 86.4
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.8e-59 233.8 221 52.0
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 6.1e-52 208.8 123 77.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.7e-44 183.3 233 47.2
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.1e-37 161.4 209 43.1
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.0e-35 154.8 103 70.9
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.0e-35 154.8 94 71.3
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.4e-35 154.5 265 39.2
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 4.4e-34 149.4 102 68.6
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 1.1e-32 144.8 100 66.0
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 5.9e-31 139.0 125 58.4
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.2e-28 131.3 186 36.6
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.0e-27 128.3 168 45.8
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.4e-24 117.1 55 87.3
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 2.0e-23 114.0 62 79.0
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 6.6e-22 109.0 106 51.9
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.1e-21 108.2 308 26.9
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.5e-21 107.8 101 57.4
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.6e-18 97.1 99 51.5
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.9e-14 83.2 66 59.1
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.1e-14 82.8 75 56.0
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.5e-13 81.3 63 66.7
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 2.5e-13 80.5 61 65.6
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.0e-11 73.2 188 30.3
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.4e-08 63.9 58 58.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.1e-07 60.8 39 71.8
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 2.7e-07 60.5 109 35.8


User provided reference genes

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