Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0213450 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D014543 5.1e-99 364.4 179 100.0
Zm00001eb000890 Zea mays HOM05D000141 ORTHO05D001311 4.4e-18 95.5 61 77.0
Os02g0609800 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D014543 9.1e-16 87.8 52 84.6
Zm00001eb121850 Zea mays HOM05D027840 ORTHO05D014543 3.5e-15 85.9 70 64.3
Zm00001eb153160 Zea mays HOM05D027840 ORTHO05D014543 5.9e-15 85.1 69 63.8
Aqoxy6G01483 Aquilegia oxysepala HOM05D000141 ORTHO05D001311 1.7e-14 83.6 62 69.4
MBI16_g27901_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001311 5.0e-14 82.0 85 52.9
HanXRQChr07g0188821 Helianthus annuus HOM05D000141 ORTHO05D001311 1.1e-13 80.9 59 66.1
Lju188C9T2 Lonicera japonica HOM05D000141 ORTHO05D001311 1.1e-13 80.9 62 66.1
Nn5g29821 Nelumbo nucifera HOM05D000141 ORTHO05D001311 1.5e-13 80.5 89 52.8
TAR256G0003 Trochodendron aralioides HOM05D000141 ORTHO05D001311 1.5e-13 80.5 89 53.9
Cfa006861 Carpinus fangiana HOM05D000141 ORTHO05D001311 9.4e-13 77.8 62 66.1
Ca_25221_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001311 9.4e-13 77.8 62 64.5
TWI74G0124 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 9.4e-13 77.8 75 53.3
TAR625G0953 Trochodendron aralioides HOM05D000141 ORTHO05D001311 9.4e-13 77.8 89 49.4
MSTRG.2607 Avicennia marina HOM05D000141 ORTHO05D001311 1.2e-12 77.4 76 51.3
TPR.G28819 Trifolium pratense HOM05D000141 ORTHO05D001311 1.2e-12 77.4 62 64.5
Haze_03903 Corylus avellana HOM05D000141 ORTHO05D001311 1.6e-12 77.0 62 66.1
Dinv36958 Davidia involucrata HOM05D000141 ORTHO05D001311 1.6e-12 77.0 62 64.5
CSS0024215 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 2.1e-12 76.6 62 61.3
GSVIVG01003948001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.1e-12 76.6 66 59.1
Medtr5g031470 Medicago truncatula HOM05D000141 ORTHO05D001311 2.7e-12 76.3 62 62.9
Medtr5g049820 Medicago truncatula HOM05D000141 ORTHO05D001311 2.7e-12 76.3 62 62.9
PSO541G4774 Papaver somniferum HOM05D000141 ORTHO05D001311 4.7e-12 75.5 89 46.1
Psat2g091360 Pisum sativum HOM05D000141 ORTHO05D001311 4.7e-12 75.5 61 63.9
TWI53G1166 Tripterygium wilfordii HOM05D000141 ORTHO05D001311 4.7e-12 75.5 61 63.9
PSO675G0929 Papaver somniferum HOM05D000141 ORTHO05D001311 6.1e-12 75.1 89 44.9
AT2G22610 Arabidopsis thaliana HOM05D000141 ORTHO05D001311 8.0e-12 74.7 62 61.3
A09p57390 Brassica napus HOM05D000141 ORTHO05D001311 8.0e-12 74.7 62 61.3
COL.COLO4_35277 Corchorus olitorius HOM05D000141 ORTHO05D001311 8.0e-12 74.7 89 43.8
Gohir.A05G218500 Gossypium hirsutum HOM05D000141 ORTHO05D001311 8.0e-12 74.7 62 59.7
Medtr5g049620 Medicago truncatula HOM05D000141 ORTHO05D001311 8.0e-12 74.7 62 61.3
vmacro18541 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 8.0e-12 74.7 62 61.3
HanXRQChr14g0444581 Helianthus annuus HOM05D000141 ORTHO05D001311 1.0e-11 74.3 58 60.3
PSO765G0220 Papaver somniferum HOM05D000141 ORTHO05D014543 1.0e-11 74.3 91 42.9
Atru.chr13.980 Acer truncatum HOM05D000141 ORTHO05D001311 1.4e-11 73.9 61 62.3
DCAR_003440 Daucus carota HOM05D000141 ORTHO05D001311 1.4e-11 73.9 61 62.3
Lsat_1_v5_gn_2_69721 Lactuca sativa HOM05D000141 ORTHO05D001311 1.4e-11 73.9 56 62.5
Dinv27017 Davidia involucrata HOM05D000141 ORTHO05D001311 1.8e-11 73.6 62 62.9
Gohir.A12G085600 Gossypium hirsutum HOM05D000141 ORTHO05D001311 1.8e-11 73.6 62 59.7
Gohir.D05G221200 Gossypium hirsutum HOM05D000141 ORTHO05D001311 1.8e-11 73.6 62 58.1
Gohir.D12G083700 Gossypium hirsutum HOM05D000141 ORTHO05D001311 1.8e-11 73.6 62 59.7
Gorai.008G093800 Gossypium raimondii HOM05D000141 ORTHO05D001311 1.8e-11 73.6 62 59.7
Gorai.009G228400 Gossypium raimondii HOM05D000141 ORTHO05D001311 1.8e-11 73.6 62 58.1
COL.COLO4_27381 Corchorus olitorius HOM05D000141 ORTHO05D001311 2.3e-11 73.2 62 56.5
ECA238G1069 Erigeron canadensis HOM05D000141 ORTHO05D001311 2.3e-11 73.2 56 62.5
PSO349G0084 Papaver somniferum HOM05D000141 ORTHO05D014543 2.3e-11 73.2 78 46.2
Rhsim08G0017900 Rhododendron simsii HOM05D000141 ORTHO05D001311 2.3e-11 73.2 90 45.6
CARHR113830 Cardamine hirsuta HOM05D000141 ORTHO05D001311 3.0e-11 72.8 62 59.7
Cpa.g.sc55.5 Carica papaya HOM05D000141 ORTHO05D001311 3.0e-11 72.8 61 60.7
CiPaw.07G045600 Carya illinoinensis HOM05D000141 ORTHO05D001311 3.0e-11 72.8 56 66.1
Duzib147G1503 Durio zibethinus HOM05D000141 ORTHO05D001311 3.0e-11 72.8 62 58.1
Atru.chr3.1212 Acer truncatum HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 59.7
BcaC07g41046 Brassica carinata HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 59.7
CSS0019102 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 58.1
CANSAT01G3278 Cannabis sativa HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 58.1
Duzib093G0423 Durio zibethinus HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 56.5
Glyma.01G021200 Glycine max HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 61.3
Sp4g01650 Schrenkiella parvula HOM05D000141 ORTHO05D001311 4.0e-11 72.4 62 59.7
AL4G12150 Arabidopsis lyrata HOM05D000141 ORTHO05D001311 5.2e-11 72.0 62 59.7
Duzib187G1520 Durio zibethinus HOM05D000141 ORTHO05D001311 5.2e-11 72.0 61 59.0
Thhalv10000025m.g Eutrema salsugineum HOM05D000141 ORTHO05D001311 5.2e-11 72.0 62 58.1
Lj2g0018682 Lotus japonicus HOM05D000141 ORTHO05D001311 5.2e-11 72.0 62 61.3
Oeu012260.1 Olea europaea HOM05D000141 ORTHO05D001311 5.2e-11 72.0 75 48.0
Thecc.01G087800 Theobroma cacao HOM05D000141 ORTHO05D001311 5.2e-11 72.0 63 57.1
Actinidia06505 Actinidia chinensis HOM05D000141 ORTHO05D001311 6.8e-11 71.6 75 48.0
Carub.0004s0176 Capsella rubella HOM05D000141 ORTHO05D001311 6.8e-11 71.6 62 59.7
Glyma.09G200800 Glycine max HOM05D000141 ORTHO05D001311 6.8e-11 71.6 62 61.3
Lsat_1_v5_gn_3_63140 Lactuca sativa HOM05D000141 ORTHO05D001311 6.8e-11 71.6 58 62.1
QL06p036404 Quercus lobata HOM05D000141 ORTHO05D001311 6.8e-11 71.6 67 58.2
Sc16g0000650 Simmondsia chinensis HOM05D000141 ORTHO05D001311 6.8e-11 71.6 62 58.1
Sc16g0001010 Simmondsia chinensis HOM05D000141 ORTHO05D001311 6.8e-11 71.6 62 58.1
Atru.chr2.3472 Acer truncatum HOM05D000141 ORTHO05D001311 8.8e-11 71.2 55 63.6
CSS0012318 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D014543 8.8e-11 71.2 62 58.1
Ciclev10024772m.g Citrus clementina HOM05D000141 ORTHO05D001311 8.8e-11 71.2 56 62.5
Prupe.6G205100 Prunus persica HOM05D000141 ORTHO05D001311 8.8e-11 71.2 62 59.7
PGR031G0460 Punica granatum HOM05D000141 ORTHO05D001311 8.8e-11 71.2 55 63.6
Eucgr.I00567 Eucalyptus grandis HOM05D000141 ORTHO05D001311 1.2e-10 70.9 56 58.9
Aa31LG7G14210 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.5e-10 70.5 62 56.5
CAN.G1813.5 Capsicum annuum HOM05D000141 ORTHO05D001311 1.5e-10 70.5 62 59.7
Cc07_g13820 Coffea canephora HOM05D000141 ORTHO05D001311 2.0e-10 70.1 61 60.7
Peaxi162Scf01414g00011 Petunia axillaris HOM05D000141 ORTHO05D001311 2.0e-10 70.1 62 56.5
Phvul.002G145000 Phaseolus vulgaris HOM05D000141 ORTHO05D001311 2.0e-10 70.1 62 59.7
VMungo1215G1944 Vigna mungo HOM05D000141 ORTHO05D001311 2.0e-10 70.1 62 59.7
Actinidia25297 Actinidia chinensis HOM05D000141 ORTHO05D001311 2.6e-10 69.7 62 56.5
Cc10_g08390 Coffea canephora HOM05D000141 ORTHO05D001311 2.6e-10 69.7 76 48.7
Migut.H02276 Erythranthe guttata HOM05D000141 ORTHO05D001311 2.6e-10 69.7 56 60.7
QL09p018403 Quercus lobata HOM05D000141 ORTHO05D001311 2.6e-10 69.7 61 57.4
SGA_v2.0_scaffold195G40873 Striga asiatica HOM05D000141 ORTHO05D001311 2.6e-10 69.7 62 58.1
Thecc.08G073700 Theobroma cacao HOM05D000141 ORTHO05D001311 2.6e-10 69.7 55 61.8
Lalb_Chr09g0325901 Lupinus albus HOM05D000141 ORTHO05D001311 3.4e-10 69.3 62 58.1
Nitab4.5_0000402g0070 Nicotiana tabacum HOM05D000141 ORTHO05D001311 3.4e-10 69.3 61 60.7
RcHm_v2.0_Chr2g0110681 Rosa chinensis HOM05D000141 ORTHO05D001311 3.4e-10 69.3 62 54.8
GSVIVG01009205001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.4e-10 69.3 62 56.5
ATR0767G147 Amborella trichopoda HOM05D000141 ORTHO05D001311 4.4e-10 68.9 59 57.6
arahy.Tifrunner.gnm1.ann1.87KB7U Arachis hypogaea HOM05D000141 ORTHO05D001311 4.4e-10 68.9 62 59.7
arahy.Tifrunner.gnm1.ann1.DW36QZ Arachis hypogaea HOM05D000141 ORTHO05D001311 4.4e-10 68.9 62 59.7
FvH4_1g19311 Fragaria vesca HOM05D000141 ORTHO05D001311 4.4e-10 68.9 62 54.8
FAN19G0828 Fragaria x ananassa HOM05D000141 ORTHO05D001311 4.4e-10 68.9 62 54.8
FAN23G2724 Fragaria x ananassa HOM05D000141 ORTHO05D001311 4.4e-10 68.9 62 54.8
FAN26G0872 Fragaria x ananassa HOM05D000141 ORTHO05D001311 4.4e-10 68.9 62 54.8
SEGI_20995 Sequoiadendron giganteum HOM05D000141 ORTHO05D001311 4.4e-10 68.9 64 54.7
Manes.13G102000 Manihot esculenta HOM05D000141 ORTHO05D001311 5.7e-10 68.6 70 48.6
Actinidia29659 Actinidia chinensis HOM05D000141 ORTHO05D001311 7.5e-10 68.2 61 55.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 7.5e-10 68.2 56 60.7
Lalb_Chr16g0381571 Lupinus albus HOM05D000141 ORTHO05D001311 7.5e-10 68.2 62 58.1
Peaxi162Scf00085g00531 Petunia axillaris HOM05D000141 ORTHO05D001311 9.8e-10 67.8 62 56.5
Rhsim07G0213200 Rhododendron simsii HOM05D000141 ORTHO05D001311 9.8e-10 67.8 89 43.8
RcHm_v2.0_Chr7g0234871 Rosa chinensis HOM05D000141 ORTHO05D001311 9.8e-10 67.8 62 58.1
Sopen11g005660 Solanum pennellii HOM05D000141 ORTHO05D001311 9.8e-10 67.8 62 54.8
PGSC0003DMG400016188 Solanum tuberosum HOM05D000141 ORTHO05D001311 9.8e-10 67.8 62 54.8
Dinv42594 Davidia involucrata HOM05D000141 ORTHO05D001311 1.3e-09 67.4 61 57.4
FvH4_5g34300 Fragaria vesca HOM05D000141 ORTHO05D001311 1.3e-09 67.4 70 55.7
Hund14076 Selenicereus undatus HOM05D000141 ORTHO05D001311 1.3e-09 67.4 75 45.3
Cfa013813 Carpinus fangiana HOM05D000141 ORTHO05D001311 1.7e-09 67.0 61 59.0
AUR62003690 Chenopodium quinoa HOM05D000141 ORTHO05D001311 2.2e-09 66.6 61 55.7
Ciclev10000147m.g Citrus clementina HOM05D000141 ORTHO05D001311 2.2e-09 66.6 75 44.0
FAN08G1721 Fragaria x ananassa HOM05D000141 ORTHO05D001311 2.2e-09 66.6 62 58.1
FAN18G0148 Fragaria x ananassa HOM05D000141 ORTHO05D001311 2.2e-09 66.6 62 58.1
Solyc11g010920.3 Solanum lycopersicum HOM05D000141 ORTHO05D001311 2.2e-09 66.6 61 55.7
THA.LOC104807667 Tarenaya hassleriana HOM05D000141 ORTHO05D001311 2.2e-09 66.6 62 51.6
arahy.Tifrunner.gnm1.ann1.EWVD58 Arachis hypogaea HOM05D000141 ORTHO05D001311 2.8e-09 66.2 63 54.0
arahy.Tifrunner.gnm1.ann1.ZX9CFH Arachis hypogaea HOM05D000141 ORTHO05D001311 2.8e-09 66.2 63 54.0
CiPaw.07G163200 Carya illinoinensis HOM05D000141 ORTHO05D001311 3.7e-09 65.9 61 57.4
AUR62018001 Chenopodium quinoa HOM05D000141 ORTHO05D001311 3.7e-09 65.9 61 55.7
Ah.03g143250 Amaranthus hybridus HOM05D000141 ORTHO05D001311 8.3e-09 64.7 61 54.1
FAN28G1133 Fragaria x ananassa HOM05D000141 ORTHO05D001311 8.3e-09 64.7 62 53.2
Rhsim03G0006800 Rhododendron simsii HOM05D000067 ORTHO05D001311 8.3e-09 64.7 62 53.2
vmacro04638 Vaccinium macrocarpon HOM05D000141 ORTHO05D001311 1.1e-08 64.3 89 42.7
unitig_62.g23413 Utricularia gibba HOM05D000141 ORTHO05D001311 1.4e-08 63.9 70 44.3
Lj4A86G78 Lonicera japonica HOM05D000141 ORTHO05D001311 5.4e-08 62.0 56 51.8
Prupe.1G535100 Prunus persica HOM05D000141 ORTHO05D001311 9.1e-08 61.2 61 50.8
Cpa.g.sc21.41 Carica papaya HOM05D000141 ORTHO05D001311 1.2e-07 60.8 56 55.4
MD08G1202900 Malus domestica HOM05D000141 ORTHO05D001311 5.9e-07 58.5 83 37.3
Potri.002G110600 Populus trichocarpa HOM05D000141 ORTHO05D001311 5.9e-07 58.5 56 55.4
Sabra02G0087100 Salix brachista HOM05D000141 ORTHO05D001311 2.3e-06 56.6 56 53.6
CDE02G4125 Ceratophyllum demersum HOM05D000141 ORTHO05D001311 8.6e-06 54.7 56 53.6


User provided reference genes

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