Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 1.6e-71 272.7 144 100.0
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 6.9e-22 107.8 152 52.0
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 5.3e-14 81.6 139 41.0
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 4.5e-13 78.6 134 44.8
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 2.9e-12 75.9 107 48.6
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.9e-12 75.9 107 48.6
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 3.8e-12 75.5 104 45.2
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 6.4e-12 74.7 112 47.3
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 1.1e-11 73.9 115 44.3
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 9.3e-11 70.9 60 58.3
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 1.2e-10 70.5 116 43.1
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.2e-10 70.5 97 41.2
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 1.2e-10 70.5 116 41.4
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 1.2e-10 70.5 108 46.3
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.6e-10 70.1 107 48.6
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 1.6e-10 70.1 112 46.4
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 1.6e-10 70.1 108 43.5
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 2.1e-10 69.7 110 44.5
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 2.7e-10 69.3 112 44.6
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 3.5e-10 68.9 119 46.2
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 3.5e-10 68.9 119 46.2
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 3.5e-10 68.9 119 42.0
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 3.5e-10 68.9 107 44.9
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 3.5e-10 68.9 112 42.9
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 4.6e-10 68.6 108 43.5
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 6.0e-10 68.2 113 41.6
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 7.9e-10 67.8 60 53.3
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.0e-09 67.4 110 44.5
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.0e-09 67.4 110 44.5
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.0e-09 67.4 92 45.7
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.0e-09 67.4 100 42.0
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 1.0e-09 67.4 114 41.2
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 1.0e-09 67.4 120 41.7
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.3e-09 67.0 115 41.7
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.8e-09 66.6 105 41.9
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 1.8e-09 66.6 126 38.9
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 3.0e-09 65.9 135 41.5
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 3.0e-09 65.9 46 67.4
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 3.9e-09 65.5 116 42.2
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.1e-09 65.1 126 38.1
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 6.7e-09 64.7 80 46.2
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 6.7e-09 64.7 99 45.5
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 6.7e-09 64.7 103 45.6
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 8.7e-09 64.3 107 44.9
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 8.7e-09 64.3 104 45.2
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 1.1e-08 63.9 116 43.1
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 1.1e-08 63.9 130 41.5
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.9e-08 63.2 99 45.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 1.9e-08 63.2 137 44.5
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.5e-08 62.8 59 61.0
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 2.5e-08 62.8 130 40.8
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 2.5e-08 62.8 141 38.3
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 2.5e-08 62.8 140 36.4
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 2.5e-08 62.8 103 42.7
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 3.3e-08 62.4 130 40.8
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 5.6e-08 61.6 134 40.3
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 5.6e-08 61.6 144 38.2
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 7.4e-08 61.2 109 43.1
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 7.4e-08 61.2 87 47.1
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 7.4e-08 61.2 87 47.1
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 9.6e-08 60.8 112 39.3
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 9.6e-08 60.8 141 40.4
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 9.6e-08 60.8 90 44.4
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 1.3e-07 60.5 141 39.0
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 1.6e-07 60.1 110 40.0
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 2.8e-07 59.3 138 38.4
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 6.2e-07 58.2 140 35.0
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 8.1e-07 57.8 111 37.8
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 8.1e-07 57.8 105 43.8
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 8.1e-07 57.8 148 37.2
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 1.1e-06 57.4 141 36.2
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 1.8e-06 56.6 106 42.5
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 2.4e-06 56.2 114 43.9
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 3.1e-06 55.8 119 37.8
Cfa018638 Carpinus fangiana HOM05D002803 ORTHO05D003089 3.1e-06 55.8 61 47.5
Haze_17431 Corylus avellana HOM05D002803 ORTHO05D003089 4.0e-06 55.5 126 33.3
Dinv05804 Davidia involucrata HOM05D002803 ORTHO05D003089 4.0e-06 55.5 124 35.5
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 6.9e-06 54.7 114 43.9
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 6.9e-06 54.7 114 43.9
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 6.9e-06 54.7 114 39.5
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 9.0e-06 54.3 58 51.7
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 9.0e-06 54.3 71 43.7


User provided reference genes

Program Settings