Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.8e-154 548.1 273 100.0
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 6.8e-79 298.1 251 61.0
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.0e-74 284.3 258 58.5
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 8.1e-56 221.5 241 49.0
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 8.9e-55 218.0 246 46.7
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 2.2e-53 213.4 254 48.0
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 6.4e-53 211.8 238 47.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.3e-53 211.5 250 44.8
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 8.3e-53 211.5 244 47.5
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.1e-52 211.1 238 46.6
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.4e-52 210.7 238 45.4
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.4e-52 209.9 250 45.2
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.2e-52 209.5 260 44.6
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 9.2e-52 208.0 237 44.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 9.2e-52 208.0 241 45.6
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-51 207.6 246 44.3
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.0e-51 205.3 244 44.7
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 6.0e-51 205.3 240 48.8
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.0e-50 204.5 238 45.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.0e-50 204.5 237 47.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.7e-50 203.8 242 43.8
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 5.1e-50 202.2 249 45.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.3e-49 199.5 245 44.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 5.6e-49 198.7 229 45.9
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 7.3e-49 198.4 238 44.1
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.3e-49 198.4 245 44.5
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.2e-48 197.6 244 43.9
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.2e-48 197.6 236 45.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-48 197.6 237 45.1
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 2.1e-48 196.8 241 44.0
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.1e-48 196.8 247 44.1
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 3.6e-48 196.1 235 42.6
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 3.6e-48 196.1 250 45.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 4.7e-48 195.7 250 43.6
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.1e-47 194.5 251 41.8
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.4e-47 194.1 242 44.2
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.4e-47 194.1 240 43.8
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.8e-47 193.7 234 43.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.8e-47 193.7 239 45.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.4e-47 193.4 233 45.9
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 2.4e-47 193.4 238 42.4
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.1e-47 193.0 251 42.2
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 4.0e-47 192.6 238 44.1
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 5.2e-47 192.2 239 45.6
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 8.9e-47 191.4 246 41.5
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.2e-46 191.0 240 42.9
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-46 190.7 241 44.4
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 2.0e-46 190.3 241 41.5
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.6e-46 189.9 232 42.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 3.4e-46 189.5 238 43.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 3.4e-46 189.5 248 44.4
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 4.4e-46 189.1 248 41.1
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.4e-46 189.1 240 43.3
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 7.6e-46 188.3 241 44.0
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 7.6e-46 188.3 250 40.0
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 7.6e-46 188.3 243 43.2
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.3e-45 187.6 231 44.6
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.7e-45 187.2 256 44.9
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.2e-45 186.8 240 42.1
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.9e-45 186.4 231 42.4
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 2.9e-45 186.4 240 44.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.9e-45 186.4 239 43.9
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.8e-45 186.0 250 41.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.8e-45 186.0 238 42.0
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 3.8e-45 186.0 240 42.9
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 6.4e-45 185.3 249 41.4
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 8.4e-45 184.9 230 43.0
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-44 184.1 237 41.4
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.9e-44 183.7 238 39.5
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.9e-44 183.7 241 41.5
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.4e-44 183.3 231 42.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.4e-44 183.3 233 42.1
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 3.2e-44 183.0 198 51.5
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 3.2e-44 183.0 244 38.9
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.2e-44 183.0 237 42.2
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.4e-44 182.2 237 43.0
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.4e-44 182.2 238 42.9
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.2e-43 181.0 236 40.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.2e-43 181.0 240 40.4
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.6e-43 180.6 231 40.3
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.6e-43 180.6 237 41.4
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 3.5e-43 179.5 242 40.5
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 3.5e-43 179.5 237 40.5
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 4.6e-43 179.1 246 40.2
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 7.8e-43 178.3 240 43.3
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.3e-42 177.6 261 39.5
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.7e-42 177.2 239 41.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.7e-42 177.2 261 39.5
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 2.3e-42 176.8 258 39.5
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.3e-42 176.8 245 40.0
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.0e-42 176.4 261 39.1
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 3.0e-42 176.4 207 48.3
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.0e-42 176.4 239 41.0
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 3.0e-42 176.4 237 38.4
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.0e-42 176.4 195 47.7
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 3.9e-42 176.0 254 40.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 6.6e-42 175.3 239 40.2
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-41 174.5 239 40.2
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.1e-41 174.5 246 41.5
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.9e-41 173.7 242 38.4
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.9e-41 173.7 237 40.9
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.5e-41 173.3 244 42.6
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 3.3e-41 172.9 249 40.6
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 3.3e-41 172.9 237 39.7
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 3.3e-41 172.9 212 44.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 4.3e-41 172.6 251 41.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 9.6e-41 171.4 244 39.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 9.6e-41 171.4 237 40.9
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 8.1e-40 168.3 240 37.9
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.1e-39 167.9 215 43.3
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.8e-39 167.2 264 38.3
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.8e-39 167.2 264 38.3
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.0e-39 166.0 240 40.0
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 6.9e-39 165.2 229 43.2
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 6.9e-39 165.2 229 43.2
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 5.8e-38 162.2 224 42.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.3e-37 161.0 215 44.7
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.4e-36 157.5 251 37.1
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.2e-36 156.4 185 47.0
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.2e-35 154.5 227 41.4
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.7e-35 153.3 238 37.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.0e-35 152.1 223 41.3
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 7.8e-35 151.8 210 43.3
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.7e-34 150.6 182 46.2
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.7e-34 150.6 182 46.2
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.7e-34 150.6 229 43.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.0e-34 149.8 169 47.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 5.1e-34 149.1 247 38.1
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 3.3e-33 146.4 210 39.0
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.2e-30 137.9 222 37.8
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.0e-30 137.1 207 39.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 8.4e-29 131.7 214 37.9
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.7e-27 126.7 207 38.6
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 6.0e-27 125.6 216 37.5
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.1e-25 121.3 243 33.3
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.5e-25 120.9 259 34.4
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 4.3e-25 119.4 97 52.6
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 3.2e-20 103.2 238 33.6
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 7.1e-20 102.1 80 61.2
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.8e-18 97.4 80 57.5
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 2.3e-18 97.1 170 38.2
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.3e-17 93.2 86 55.8
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 9.6e-17 91.7 247 27.9
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 4.8e-16 89.4 147 36.1
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.6e-14 82.0 102 42.2
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 3.2e-12 76.6 115 36.5
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.2e-11 74.7 138 34.8
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.6e-11 74.3 142 33.8
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.3e-10 70.5 88 40.9
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 8.7e-10 68.6 66 50.0


User provided reference genes

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