Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 3.5e-263 911.0 430 100.0
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.0e-230 803.1 430 86.0
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 5.9e-194 681.0 367 86.1
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 6.5e-193 677.6 420 72.4
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 6.5e-193 677.6 418 71.5
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 8.5e-193 677.2 420 71.7
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 2.5e-192 675.6 421 72.0
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 4.2e-192 674.9 420 71.7
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 5.5e-192 674.5 422 70.1
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 7.2e-192 674.1 420 71.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 9.4e-192 673.7 420 71.7
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 9.4e-192 673.7 419 71.8
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.2e-191 673.3 420 73.1
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 2.7e-191 672.2 422 71.1
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 2.7e-191 672.2 420 70.7
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 7.9e-191 670.6 419 72.3
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 1.0e-190 670.2 423 70.4
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.0e-190 670.2 422 69.4
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.4e-190 669.8 426 69.2
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.3e-190 669.1 422 69.7
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 1.5e-189 666.4 420 70.5
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.5e-189 666.4 425 69.4
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.0e-189 666.0 425 69.9
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.5e-189 665.6 421 72.0
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 4.3e-189 664.8 414 71.3
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 7.4e-189 664.1 423 71.2
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 7.4e-189 664.1 423 70.7
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 9.7e-189 663.7 430 70.0
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.3e-188 663.3 426 69.2
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.7e-188 662.9 419 71.4
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.7e-188 662.9 418 70.8
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 2.2e-188 662.5 423 71.2
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 2.2e-188 662.5 422 68.7
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 4.8e-188 661.4 418 70.3
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.1e-187 660.2 422 68.2
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.1e-187 660.2 419 71.4
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.1e-187 660.2 420 70.2
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 1.4e-187 659.8 422 68.2
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 1.4e-187 659.8 420 70.0
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.8e-187 659.4 422 68.2
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.8e-187 659.4 423 70.4
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.8e-187 659.4 422 71.1
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-187 659.1 418 70.1
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 3.1e-187 658.7 420 68.6
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 6.9e-187 657.5 420 70.2
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 9.1e-187 657.1 423 69.3
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 9.1e-187 657.1 423 69.5
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 9.1e-187 657.1 420 71.0
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.6e-186 655.6 420 70.0
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 3.4e-186 655.2 421 69.6
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 3.4e-186 655.2 422 70.6
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 3.4e-186 655.2 423 70.2
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 3.4e-186 655.2 420 70.5
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 4.5e-186 654.8 422 69.7
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 4.5e-186 654.8 422 70.1
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 5.9e-186 654.4 419 70.9
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 7.7e-186 654.1 420 69.8
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.0e-185 653.7 419 70.6
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.0e-185 653.7 423 69.3
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.7e-185 652.9 420 69.3
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 3.8e-185 651.7 420 68.8
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 3.8e-185 651.7 420 69.8
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 5.0e-185 651.4 420 69.5
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 5.0e-185 651.4 423 68.8
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 5.0e-185 651.4 423 68.8
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 6.5e-185 651.0 422 68.7
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 8.5e-185 650.6 419 69.0
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 1.9e-184 649.4 427 68.4
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 4.2e-184 648.3 423 70.0
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 5.5e-184 647.9 423 68.6
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 7.2e-184 647.5 422 67.8
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 1.2e-183 646.7 423 68.3
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 2.1e-183 646.0 452 66.4
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.6e-183 645.2 447 66.7
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 7.9e-183 644.0 420 68.6
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 1.0e-182 643.7 416 69.7
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.0e-182 643.7 418 68.4
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.4e-182 643.3 418 68.2
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.4e-182 643.3 447 66.4
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 3.0e-182 642.1 423 68.8
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 3.0e-182 642.1 420 68.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.9e-182 641.7 418 67.9
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 5.1e-182 641.3 423 68.6
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 7.4e-181 637.5 420 67.9
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 2.8e-180 635.6 405 69.1
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 4.8e-180 634.8 462 63.0
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 6.3e-180 634.4 409 68.7
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 8.2e-180 634.0 420 66.7
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 1.4e-179 633.3 404 69.3
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.4e-179 632.5 404 69.1
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 5.3e-179 631.3 423 67.1
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 9.1e-179 630.6 402 69.7
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 3.5e-178 628.6 421 67.9
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 3.5e-178 628.6 398 71.6
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 1.0e-177 627.1 398 71.4
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 6.5e-177 624.4 420 66.7
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.5e-176 622.5 420 66.9
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.6e-175 619.8 419 65.9
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 6.1e-175 617.8 505 58.4
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 2.0e-173 612.8 429 65.5
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.0e-173 612.8 414 66.9
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.7e-172 609.8 433 64.2
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 2.4e-171 605.9 456 60.7
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 3.1e-171 605.5 406 69.0
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 1.2e-170 603.6 435 64.4
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 2.9e-169 599.0 389 68.1
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 4.2e-168 595.1 459 61.2
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 2.8e-164 582.4 422 62.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 5.3e-163 578.2 419 63.7
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 6.5e-161 571.2 425 61.9
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 3.0e-158 562.4 402 64.7
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 2.8e-156 555.8 423 59.1
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 7.0e-155 551.2 424 61.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 5.0e-153 545.0 426 59.2
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 2.8e-151 539.3 377 65.0
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 9.5e-144 514.2 420 58.8
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 2.0e-141 506.5 300 72.3
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.6e-138 495.4 363 62.3
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 6.0e-138 495.0 419 58.5
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 8.6e-137 491.1 439 55.4
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 7.5e-133 478.0 424 52.8
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 2.7e-122 443.0 271 71.2
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 2.9e-116 422.9 470 45.3
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 7.3e-112 408.3 470 44.7
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 2.0e-109 400.2 465 45.4
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.3e-108 397.5 466 45.9
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 2.2e-108 396.7 428 48.4
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.0e-46 189.1 115 68.7
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.7e-29 134.0 115 53.0
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 5.2e-25 119.8 92 63.0
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 5.2e-25 119.8 92 63.0
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 8.9e-25 119.0 80 66.2
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.1e-22 112.1 100 55.0
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 2.3e-17 94.4 138 41.3
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 2.2e-15 87.8 73 57.5
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 4.1e-14 83.6 69 59.4
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 1.2e-13 82.0 74 55.4
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.2e-13 82.0 55 61.8
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 6.0e-13 79.7 67 59.7
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.6e-08 64.3 204 26.5
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 4.9e-07 60.1 58 51.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 8.4e-07 59.3 291 24.4
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.4e-06 56.6 204 25.5
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 7.1e-06 56.2 122 32.8
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 7.1e-06 56.2 169 28.4


User provided reference genes

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