Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.5e-59 231.9 116 100.0
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.6e-45 186.0 109 80.7
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 3.8e-39 164.9 112 71.4
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 2.5e-38 162.2 111 67.6
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.6e-37 158.3 107 67.3
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 4.7e-37 157.9 111 66.7
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 7.9e-37 157.1 106 68.9
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 3.9e-36 154.8 110 66.4
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 5.1e-36 154.5 110 65.5
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 6.7e-36 154.1 107 68.2
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 8.8e-36 153.7 106 67.9
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.5e-35 152.9 107 67.3
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.0e-35 152.5 107 66.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.0e-35 152.5 106 66.0
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.0e-35 152.5 116 62.1
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.6e-35 152.1 111 64.0
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.6e-35 152.1 110 65.5
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.4e-35 151.4 110 65.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 4.4e-35 151.4 106 67.0
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 5.7e-35 151.0 107 69.2
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 5.7e-35 151.0 106 65.1
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.3e-34 149.8 110 64.5
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.3e-34 149.8 111 63.1
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.2e-34 149.1 107 67.3
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.2e-34 149.1 110 64.5
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.8e-34 148.7 110 63.6
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.8e-34 148.7 109 66.1
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 3.7e-34 148.3 109 66.1
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.7e-34 148.3 107 62.6
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 3.7e-34 148.3 107 62.6
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 3.7e-34 148.3 110 65.5
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 4.8e-34 147.9 105 66.7
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 6.3e-34 147.5 113 63.7
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.3e-34 147.5 110 61.8
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 6.3e-34 147.5 107 63.6
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 8.2e-34 147.1 109 64.2
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.1e-33 146.7 110 61.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.1e-33 146.7 107 63.6
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.1e-33 146.7 113 62.8
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.4e-33 146.4 110 62.7
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.4e-33 146.4 116 60.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.8e-33 146.0 109 65.1
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.8e-33 146.0 107 64.5
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.8e-33 146.0 108 62.0
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.8e-33 146.0 110 60.9
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 2.4e-33 145.6 108 63.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.4e-33 145.6 110 60.9
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.4e-33 145.6 107 63.6
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 3.1e-33 145.2 108 62.0
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 4.1e-33 144.8 110 64.5
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 5.3e-33 144.4 109 63.3
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 5.3e-33 144.4 105 64.8
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.3e-33 144.4 106 64.2
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 5.3e-33 144.4 106 65.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 5.3e-33 144.4 106 64.2
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 5.3e-33 144.4 115 60.0
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 7.0e-33 144.1 106 65.1
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 7.0e-33 144.1 106 61.3
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 7.0e-33 144.1 106 64.2
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 9.1e-33 143.7 109 61.5
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.2e-32 143.3 106 63.2
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.2e-32 143.3 107 63.6
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.5e-32 142.9 109 62.4
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-32 142.9 109 61.5
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.5e-32 142.9 109 61.5
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.5e-32 142.9 109 63.3
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.5e-32 142.9 106 59.4
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.5e-32 142.9 106 63.2
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-32 142.5 107 63.6
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.0e-32 142.5 106 64.2
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.0e-32 142.5 106 63.2
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 2.0e-32 142.5 109 63.3
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.6e-32 142.1 116 60.3
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 3.5e-32 141.7 108 62.0
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.5e-32 141.4 106 64.2
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 4.5e-32 141.4 107 63.6
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 4.5e-32 141.4 107 64.5
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 7.7e-32 140.6 110 61.8
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 1.0e-31 140.2 110 60.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 1.0e-31 140.2 110 60.9
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.0e-31 140.2 109 63.3
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.7e-31 139.4 107 60.7
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 3.8e-31 138.3 107 60.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.8e-31 138.3 107 60.7
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 5.0e-31 137.9 107 61.7
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 5.0e-31 137.9 82 79.3
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 6.5e-31 137.5 105 59.0
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-30 136.3 104 60.6
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.5e-30 136.3 110 59.1
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-30 136.3 109 59.6
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.5e-30 136.3 109 59.6
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.5e-30 136.3 107 58.9
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.9e-30 136.0 107 61.7
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.5e-30 135.6 107 59.8
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 3.2e-30 135.2 113 59.3
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 4.2e-30 134.8 109 62.4
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 5.5e-30 134.4 124 54.0
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.6e-29 132.9 130 52.3
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.1e-29 132.5 102 62.7
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 2.7e-29 132.1 105 59.0
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 3.6e-29 131.7 105 58.1
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.4e-28 129.8 104 58.7
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.4e-28 129.8 89 67.4
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.8e-28 129.4 110 53.6
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.3e-28 129.0 102 61.8
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 5.2e-28 127.9 84 69.0
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.4e-27 124.8 106 57.5
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 2.2e-26 122.5 131 48.9
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 3.7e-26 121.7 93 61.3
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.7e-26 121.7 108 57.4
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 3.7e-26 121.7 105 58.1
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 4.8e-26 121.3 128 48.4
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.4e-25 119.8 83 65.1
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 9.1e-25 117.1 108 56.5
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 3.8e-23 111.7 81 66.7
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.8e-23 111.7 173 40.5
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.1e-22 110.2 79 62.0
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.4e-20 103.2 82 64.6
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 3.4e-19 98.6 87 58.6
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 4.4e-19 98.2 105 49.5
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 7.5e-19 97.4 135 39.3
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.7e-18 96.3 81 58.0
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.8e-18 95.5 60 68.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 7.0e-17 90.9 66 63.6
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 9.1e-17 90.5 75 58.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 9.1e-17 90.5 75 58.7
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.5e-16 88.2 53 69.8
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 7.7e-16 87.4 59 67.8
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 8.5e-15 84.0 66 62.1
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 3.6e-13 78.6 43 79.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.8e-10 68.9 66 50.0
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 7.7e-08 60.8 55 54.5
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.9e-07 58.9 54 55.6
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.1e-06 57.0 48 54.2


User provided reference genes

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