Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 9.2e-83 310.1 145 100.0
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 5.8e-77 290.8 145 91.7
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.3e-73 279.6 144 86.8
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 6.6e-73 277.3 144 86.8
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 6.6e-73 277.3 142 85.9
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.5e-72 276.2 144 84.7
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.3e-72 275.0 144 85.4
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.3e-72 275.0 144 86.1
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 5.6e-72 274.2 144 85.4
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.2e-71 273.1 144 84.7
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.1e-71 272.3 144 84.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 2.8e-71 271.9 142 85.2
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 2.8e-71 271.9 142 85.2
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.8e-71 271.9 144 84.7
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.8e-71 271.9 141 85.1
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.7e-71 271.2 142 84.5
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 4.7e-71 271.2 144 84.7
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.2e-71 270.8 145 81.4
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 6.2e-71 270.8 142 83.8
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.1e-70 270.0 144 84.0
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.4e-70 269.6 142 83.8
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.4e-70 269.6 142 83.8
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.3e-70 268.9 144 83.3
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 3.1e-70 268.5 142 83.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 3.1e-70 268.5 142 83.8
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.1e-70 268.5 142 83.8
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 3.1e-70 268.5 144 83.3
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 3.1e-70 268.5 142 83.8
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 3.1e-70 268.5 144 83.3
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 5.2e-70 267.7 142 83.1
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 5.2e-70 267.7 142 83.8
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 6.8e-70 267.3 142 83.1
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 6.8e-70 267.3 142 84.5
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 8.9e-70 266.9 144 82.6
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 8.9e-70 266.9 144 82.6
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 8.9e-70 266.9 142 83.1
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.2e-69 266.5 142 85.2
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-69 266.2 142 83.8
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.5e-69 266.2 145 82.1
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.5e-69 266.2 142 83.1
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.5e-69 266.2 142 83.1
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 2.0e-69 265.8 142 82.4
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 2.6e-69 265.4 142 82.4
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.6e-69 265.4 142 82.4
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 3.4e-69 265.0 144 81.9
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 4.4e-69 264.6 144 81.9
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 5.8e-69 264.2 142 81.7
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.8e-69 264.2 142 83.1
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 7.5e-69 263.8 142 82.4
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 7.5e-69 263.8 144 81.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 7.5e-69 263.8 142 81.7
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 9.8e-69 263.5 142 82.4
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 9.8e-69 263.5 142 82.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 9.8e-69 263.5 142 82.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.3e-68 263.1 142 81.7
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.3e-68 263.1 142 82.4
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.3e-68 263.1 140 83.6
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.7e-68 262.7 142 83.1
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.7e-68 262.7 144 81.9
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.2e-68 262.3 143 81.8
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.9e-68 261.2 142 81.7
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 4.9e-68 261.2 141 81.6
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.3e-68 260.4 144 79.9
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.3e-68 260.4 144 79.9
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 8.3e-68 260.4 142 81.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.3e-68 260.4 142 81.0
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 8.3e-68 260.4 142 81.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 8.3e-68 260.4 142 80.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 8.3e-68 260.4 144 78.5
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 8.3e-68 260.4 144 79.2
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.1e-67 260.0 142 81.7
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.1e-67 260.0 142 81.0
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.4e-67 259.6 142 79.6
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.4e-67 259.6 142 80.3
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 4.1e-67 258.1 142 81.0
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 4.1e-67 258.1 143 81.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 4.1e-67 258.1 145 75.2
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.4e-67 257.7 142 80.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 7.0e-67 257.3 142 80.3
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.6e-66 256.1 144 79.9
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.7e-66 255.4 142 80.3
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.7e-66 255.4 171 70.2
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.5e-66 255.0 145 77.2
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 6.0e-66 254.2 142 81.0
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 2.3e-65 252.3 177 67.2
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.9e-65 251.5 138 81.2
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 8.6e-65 250.4 142 78.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.1e-63 245.7 144 76.4
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.6e-63 245.0 142 74.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.7e-60 236.1 126 83.3
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 3.7e-60 235.0 138 79.0
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.2e-58 229.9 127 81.9
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.1e-58 229.2 118 88.1
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 4.6e-58 228.0 120 87.5
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.1e-57 224.6 123 82.9
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 6.6e-57 224.2 118 87.3
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.5e-56 223.0 119 83.2
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.5e-56 222.2 120 84.2
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 3.3e-56 221.9 118 85.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 9.5e-56 220.3 140 72.9
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 9.5e-56 220.3 140 69.3
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.4e-54 216.5 131 74.8
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.2e-53 213.4 118 80.5
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.0e-53 212.6 161 64.0
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 8.4e-52 207.2 127 75.6
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.7e-49 199.5 120 75.0
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 2.3e-49 199.1 104 87.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.9e-49 198.4 106 85.8
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.6e-48 194.5 99 88.9
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 5.2e-46 188.0 107 79.4
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 4.3e-40 168.3 140 52.9
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.6e-39 165.2 139 55.4
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.6e-39 165.2 88 86.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.1e-38 163.7 88 86.4
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.4e-38 162.5 113 70.8
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.4e-38 162.5 140 55.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.2e-37 160.2 144 53.5
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 9.9e-37 157.1 88 81.8
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.7e-36 156.4 140 54.3
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.4e-35 153.3 140 52.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.5e-34 148.7 140 48.6
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 7.9e-34 147.5 134 53.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 9.6e-32 140.6 143 51.0
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 2.8e-31 139.0 86 69.8
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.4e-27 126.7 72 83.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 4.2e-27 125.2 133 47.4
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.2e-26 123.6 70 82.9
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.7e-25 117.5 121 49.6
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 7.4e-24 114.4 59 78.0
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-19 100.5 53 79.2
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.1e-14 84.0 142 38.0
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 6.9e-14 81.3 74 52.7
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 7.7e-13 77.8 142 31.7
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.2e-10 70.5 31 93.5
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 8.2e-07 57.8 74 44.6


User provided reference genes

Program Settings