Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 4.9e-97 357.8 186 100.0
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 1.1e-83 313.5 187 87.7
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 2.5e-69 265.8 187 77.5
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 3.7e-60 235.3 155 78.1
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 4.8e-60 235.0 178 70.8
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.1e-59 232.3 178 69.7
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 5.3e-59 231.5 153 81.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.9e-59 231.1 148 80.4
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.9e-59 231.1 148 80.4
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.9e-59 231.1 148 80.4
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 5.9e-58 228.0 160 76.2
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.2e-57 226.1 183 69.4
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 2.2e-57 226.1 141 83.0
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.2e-57 226.1 143 81.8
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.8e-57 225.3 142 83.1
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 5.0e-57 224.9 142 81.7
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.0e-57 224.9 184 67.4
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.0e-57 224.9 184 67.4
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 6.5e-57 224.6 142 81.7
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 6.5e-57 224.6 147 77.6
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 8.5e-57 224.2 142 82.4
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 8.5e-57 224.2 140 84.3
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.9e-56 223.0 147 79.6
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 2.5e-56 222.6 150 80.0
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.5e-56 222.6 150 80.0
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 4.2e-56 221.9 183 68.3
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 4.2e-56 221.9 174 71.3
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 4.2e-56 221.9 140 81.4
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 4.2e-56 221.9 182 69.2
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 5.5e-56 221.5 140 80.7
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 7.2e-56 221.1 172 68.6
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 7.2e-56 221.1 164 72.6
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 9.4e-56 220.7 171 71.3
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.2e-55 220.3 171 71.3
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.6e-55 219.9 164 72.0
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.1e-55 219.5 146 80.1
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 2.7e-55 219.2 140 80.7
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 3.6e-55 218.8 140 80.0
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 3.6e-55 218.8 153 75.8
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 6.1e-55 218.0 142 80.3
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 7.9e-55 217.6 142 79.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.0e-54 217.2 139 81.3
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.4e-54 216.9 162 72.2
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.4e-54 216.9 142 78.2
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.4e-54 216.9 140 79.3
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.4e-54 216.9 140 79.3
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.3e-54 216.1 181 67.4
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.0e-54 215.7 181 66.3
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 3.9e-54 215.3 150 75.3
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 3.9e-54 215.3 164 68.9
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 6.7e-54 214.5 143 79.0
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 8.8e-54 214.2 153 74.5
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 8.8e-54 214.2 146 76.7
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 8.8e-54 214.2 146 76.7
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 8.8e-54 214.2 146 76.7
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.1e-53 213.8 138 80.4
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.1e-53 213.8 151 76.2
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.6e-53 212.6 150 74.7
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 5.7e-53 211.5 175 66.3
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 7.4e-53 211.1 145 77.2
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 7.4e-53 211.1 142 78.2
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 7.4e-53 211.1 191 64.4
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 9.7e-53 210.7 150 73.3
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 9.7e-53 210.7 184 64.1
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.7e-52 209.9 134 80.6
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.7e-52 209.9 189 64.6
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.2e-52 209.5 196 61.7
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 2.8e-52 209.1 145 75.9
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.8e-52 209.1 138 79.7
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 2.8e-52 209.1 141 78.7
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.7e-52 208.8 150 73.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 3.7e-52 208.8 177 66.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.7e-52 208.8 136 80.9
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 3.7e-52 208.8 164 70.1
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 3.7e-52 208.8 172 68.0
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.8e-52 208.4 140 79.3
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 4.8e-52 208.4 136 80.9
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 6.3e-52 208.0 191 63.9
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 6.3e-52 208.0 142 76.8
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 6.3e-52 208.0 141 76.6
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 8.2e-52 207.6 148 73.6
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 8.2e-52 207.6 151 73.5
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.1e-51 207.2 136 80.1
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.4e-51 206.8 165 69.1
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.4e-51 206.8 141 75.9
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.8e-51 206.5 147 74.8
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.8e-51 206.5 142 76.8
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 2.4e-51 206.1 149 76.5
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.4e-51 206.1 147 71.4
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.4e-51 206.1 142 74.6
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.4e-51 206.1 172 67.4
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 2.4e-51 206.1 172 67.4
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 3.1e-51 205.7 143 76.9
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 3.1e-51 205.7 143 76.9
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 3.1e-51 205.7 143 76.9
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 3.1e-51 205.7 143 76.9
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 3.1e-51 205.7 139 77.7
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 3.1e-51 205.7 186 65.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 4.1e-51 205.3 148 75.7
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 7.0e-51 204.5 142 76.1
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 7.0e-51 204.5 149 75.2
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 7.0e-51 204.5 140 78.6
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 9.1e-51 204.1 173 64.7
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.5e-50 203.4 184 64.7
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.5e-50 203.4 186 65.1
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.5e-50 203.4 145 73.8
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 2.0e-50 203.0 172 66.9
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 3.5e-50 202.2 172 68.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.5e-50 202.2 163 66.9
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 4.5e-50 201.8 140 75.0
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 5.9e-50 201.4 143 75.5
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.0e-49 200.7 191 63.9
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.3e-49 200.3 148 75.0
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.7e-49 199.9 141 71.6
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 8.5e-49 197.6 154 72.1
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.1e-48 197.2 115 89.6
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.5e-48 196.1 188 62.8
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.2e-48 195.7 140 74.3
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 3.2e-48 195.7 137 75.9
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 4.2e-48 195.3 194 58.2
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 9.4e-48 194.1 179 62.6
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.7e-47 192.6 129 79.8
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 3.6e-47 192.2 137 74.5
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.0e-46 190.7 140 72.9
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 3.9e-46 188.7 143 69.2
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 5.2e-46 188.3 139 69.8
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 6.7e-46 188.0 146 70.5
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 8.8e-46 187.6 141 73.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.0e-45 186.4 137 73.0
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 7.4e-45 184.5 115 83.5
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 7.4e-45 184.5 115 83.5
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.7e-44 183.3 186 56.5
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 3.7e-44 182.2 112 83.9
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.3e-44 181.4 163 64.4
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 8.2e-44 181.0 113 83.2
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 8.2e-44 181.0 149 67.1
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.1e-43 180.6 127 75.6
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 7.0e-43 177.9 112 83.9
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 7.0e-43 177.9 143 67.8
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 1.6e-42 176.8 121 76.0
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.6e-42 176.0 108 82.4
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.9e-41 172.6 188 56.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.8e-41 172.2 188 56.4
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.2e-40 167.9 134 70.1
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.6e-39 165.6 170 59.4
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.7e-38 161.4 146 63.7
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 8.8e-38 161.0 169 51.5
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 3.3e-37 159.1 132 64.4
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.4e-35 152.9 121 66.9
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.4e-35 152.9 113 69.0
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 2.4e-35 152.9 154 59.7
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 3.1e-35 152.5 111 68.5
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 7.0e-35 151.4 127 67.7
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 1.3e-33 147.1 99 73.7
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 5.7e-29 131.7 108 67.6
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.6e-26 123.6 109 57.8
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.2e-24 115.5 133 48.9
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.6e-23 113.6 73 76.7
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.4e-22 110.5 116 55.2
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.4e-19 100.5 91 61.5
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.1e-19 99.4 91 60.4
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 7.0e-19 98.2 85 62.4
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 2.0e-18 96.7 86 64.0
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.3e-17 94.0 86 62.8
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.3e-17 94.0 86 62.8
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.0e-14 84.3 89 55.1
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 3.7e-12 75.9 44 88.6
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.0e-10 70.1 47 74.5
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 6.0e-10 68.6 49 69.4
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 9.5e-08 61.2 38 76.3
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 4.0e-06 55.8 83 42.2


User provided reference genes

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