Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 4.1e-92 341.7 211 100.0
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 2.1e-19 100.1 217 45.2
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.1e-19 100.1 191 42.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.3e-18 96.7 200 38.5
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.6e-14 84.0 180 37.8
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 2.0e-14 83.6 167 35.9
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 3.5e-14 82.8 187 34.2
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-13 80.9 183 37.7
Os06g0653200 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.7e-13 80.5 160 43.1
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.7e-13 80.5 184 38.0
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.7e-13 80.5 192 35.9
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 2.9e-13 79.7 191 35.6
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.8e-13 79.3 191 35.6
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 5.0e-13 79.0 179 33.0
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 6.5e-13 78.6 163 38.0
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 8.5e-13 78.2 179 36.3
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 8.5e-13 78.2 178 36.5
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 8.5e-13 78.2 194 34.0
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.1e-12 77.8 189 35.4
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.5e-12 77.4 165 38.2
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.9e-12 77.0 187 35.3
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.9e-12 77.0 169 37.3
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 1.9e-12 77.0 178 34.3
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.2e-12 76.3 189 34.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 3.2e-12 76.3 185 36.8
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 4.2e-12 75.9 197 35.0
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 5.5e-12 75.5 188 34.0
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 5.5e-12 75.5 187 35.8
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.5e-12 75.5 185 35.7
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 7.2e-12 75.1 151 35.1
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.2e-12 75.1 195 32.8
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 9.4e-12 74.7 152 36.2
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 9.4e-12 74.7 187 35.3
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 9.4e-12 74.7 193 31.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 9.4e-12 74.7 190 35.3
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.2e-11 74.3 188 33.5
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.6e-11 73.9 151 34.4
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.6e-11 73.9 184 37.0
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.7e-11 73.2 151 34.4
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 2.7e-11 73.2 184 31.5
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 2.7e-11 73.2 184 31.5
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 2.7e-11 73.2 196 33.2
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.7e-11 73.2 168 36.3
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.6e-11 72.8 185 34.1
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 3.6e-11 72.8 186 32.8
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 4.7e-11 72.4 180 34.4
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 4.7e-11 72.4 175 35.4
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.7e-11 72.4 185 32.4
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 6.1e-11 72.0 151 34.4
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 6.1e-11 72.0 163 31.3
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 6.1e-11 72.0 151 34.4
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 6.1e-11 72.0 163 31.3
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 6.1e-11 72.0 151 34.4
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 6.1e-11 72.0 147 36.1
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.1e-11 72.0 187 31.0
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 8.0e-11 71.6 152 35.5
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 8.0e-11 71.6 152 35.5
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 8.0e-11 71.6 162 32.1
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 8.0e-11 71.6 187 38.0
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.0e-10 71.2 189 34.9
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.0e-10 71.2 187 33.2
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.0e-10 71.2 182 33.0
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.0e-10 71.2 186 32.3
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.0e-10 71.2 184 36.4
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 1.4e-10 70.9 177 33.9
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 1.4e-10 70.9 163 31.3
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 1.4e-10 70.9 177 33.9
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 1.4e-10 70.9 163 31.3
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.4e-10 70.9 178 35.4
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.4e-10 70.9 173 37.0
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.4e-10 70.9 181 37.0
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.4e-10 70.9 213 32.9
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.4e-10 70.9 194 33.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.8e-10 70.5 163 30.1
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.8e-10 70.5 178 35.4
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.8e-10 70.5 177 32.8
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 2.3e-10 70.1 151 33.8
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 2.3e-10 70.1 151 33.8
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 2.3e-10 70.1 186 33.9
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 3.0e-10 69.7 149 34.9
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.0e-10 69.7 182 32.4
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 3.0e-10 69.7 192 31.2
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 4.0e-10 69.3 176 32.4
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 4.0e-10 69.3 176 32.4
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 4.0e-10 69.3 163 29.4
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 4.0e-10 69.3 180 34.4
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 4.0e-10 69.3 185 34.1
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.0e-10 69.3 184 31.5
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 5.2e-10 68.9 162 30.9
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.2e-10 68.9 172 33.1
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 5.2e-10 68.9 149 34.2
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 5.2e-10 68.9 189 32.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 6.8e-10 68.6 162 31.5
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.8e-10 68.6 176 31.8
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 6.8e-10 68.6 171 32.7
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.2e-09 67.8 170 31.2
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.2e-09 67.8 178 34.8
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.5e-09 67.4 176 31.2
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 2.0e-09 67.0 177 32.8
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 2.0e-09 67.0 169 34.3
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 2.6e-09 66.6 176 31.8
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 3.4e-09 66.2 184 32.6
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.4e-09 66.2 168 32.7
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 4.4e-09 65.9 192 30.2
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 5.7e-09 65.5 186 32.8
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 7.5e-09 65.1 176 31.8
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.7e-08 63.9 160 31.9
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.7e-08 63.9 194 32.0
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.2e-08 63.5 186 30.1
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 3.7e-08 62.8 137 36.5
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 4.8e-08 62.4 155 32.3
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 6.3e-08 62.0 185 29.2
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.1e-07 61.2 162 28.4
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.1e-07 61.2 153 31.4
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.1e-07 61.2 154 33.1
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.4e-07 60.1 165 34.5
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.4e-07 60.1 147 34.7
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 2.4e-07 60.1 169 30.2
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.4e-07 60.1 162 28.4
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 3.1e-07 59.7 165 30.9
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 3.1e-07 59.7 169 30.2
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 4.1e-07 59.3 167 35.9
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.1e-07 59.3 147 34.0
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 4.1e-07 59.3 150 33.3
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 4.1e-07 59.3 171 33.3
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 4.1e-07 59.3 187 31.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.1e-07 59.3 190 31.1
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 5.4e-07 58.9 174 28.7
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 5.4e-07 58.9 166 28.9
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 7.0e-07 58.5 174 31.6
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 7.0e-07 58.5 165 31.5
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 9.1e-07 58.2 164 32.9
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 9.1e-07 58.2 197 29.4
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.2e-06 57.8 167 35.3
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.2e-06 57.8 184 37.0
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.2e-06 57.8 182 32.4
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 2.0e-06 57.0 173 30.1
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.7e-06 56.6 175 29.7
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 3.5e-06 56.2 199 34.7
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.5e-06 55.8 192 30.7


User provided reference genes

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