Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 5.2e-134 481.9 426 100.0
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 2.0e-77 293.9 443 53.7
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 8.4e-76 288.5 462 49.8
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 8.8e-41 172.2 426 37.3
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 3.3e-40 170.2 123 69.9
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 7.4e-40 169.1 109 74.3
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 2.2e-39 167.5 132 70.5
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 2.2e-39 167.5 206 49.5
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 4.8e-39 166.4 126 69.8
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 1.4e-38 164.9 100 77.0
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 1.4e-38 164.9 97 83.5
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 1.8e-38 164.5 124 68.5
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 2.4e-38 164.1 204 48.5
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 3.1e-38 163.7 101 78.2
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 3.1e-38 163.7 122 67.2
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 4.1e-38 163.3 114 71.9
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 4.1e-38 163.3 99 80.8
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 4.1e-38 163.3 99 80.8
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 4.1e-38 163.3 99 80.8
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 4.1e-38 163.3 117 70.9
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 5.3e-38 162.9 98 79.6
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 5.3e-38 162.9 99 81.8
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 1.2e-37 161.8 99 79.8
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 1.5e-37 161.4 129 67.4
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 2.0e-37 161.0 123 69.1
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 2.6e-37 160.6 99 78.8
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 3.4e-37 160.2 98 80.6
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 4.5e-37 159.8 122 66.4
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 5.9e-37 159.5 99 77.8
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 5.9e-37 159.5 125 66.4
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 5.9e-37 159.5 116 69.8
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 5.9e-37 159.5 99 77.8
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 7.7e-37 159.1 116 70.7
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 7.7e-37 159.1 205 48.8
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 7.7e-37 159.1 115 69.6
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 7.7e-37 159.1 125 66.4
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 1.0e-36 158.7 99 77.8
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 1.3e-36 158.3 126 67.5
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 1.3e-36 158.3 120 67.5
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 1.3e-36 158.3 124 66.1
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 1.7e-36 157.9 99 77.8
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 1.7e-36 157.9 99 76.8
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 2.2e-36 157.5 99 76.8
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 2.2e-36 157.5 99 76.8
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 2.9e-36 157.1 122 66.4
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 2.9e-36 157.1 111 70.3
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 2.9e-36 157.1 116 67.2
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 2.9e-36 157.1 169 52.7
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 3.8e-36 156.8 99 76.8
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 3.8e-36 156.8 163 55.2
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 5.0e-36 156.4 113 70.8
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 8.5e-36 155.6 98 78.6
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 8.5e-36 155.6 99 75.8
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 8.5e-36 155.6 126 65.1
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 1.1e-35 155.2 99 75.8
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 1.1e-35 155.2 99 75.8
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 1.1e-35 155.2 201 47.8
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 1.9e-35 154.5 167 53.3
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 2.5e-35 154.1 120 68.3
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 2.5e-35 154.1 100 71.0
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 2.5e-35 154.1 124 64.5
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 3.2e-35 153.7 99 75.8
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 3.2e-35 153.7 110 71.8
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 7.2e-35 152.5 129 60.5
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 7.2e-35 152.5 97 76.3
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 9.4e-35 152.1 167 53.9
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 1.2e-34 151.8 99 75.8
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 1.2e-34 151.8 101 75.2
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 1.6e-34 151.4 96 76.0
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 1.6e-34 151.4 115 67.8
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 3.6e-34 150.2 114 69.3
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 4.7e-34 149.8 99 76.8
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 6.1e-34 149.4 97 76.3
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 6.1e-34 149.4 118 67.8
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 7.9e-34 149.1 96 76.0
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 1.8e-33 147.9 112 66.1
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 1.8e-33 147.9 122 63.1
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 2.3e-33 147.5 112 66.1
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 2.3e-33 147.5 99 72.7
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 3.0e-33 147.1 96 75.0
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 2.6e-32 144.1 125 61.6
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 2.6e-32 144.1 125 61.6
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 2.6e-32 144.1 125 61.6
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 3.3e-32 143.7 109 66.1
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 3.3e-32 143.7 140 57.9
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 5.7e-32 142.9 207 45.9
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 7.4e-32 142.5 110 65.5
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 9.7e-32 142.1 208 46.6
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 2.2e-31 141.0 125 60.0
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 3.7e-31 140.2 125 60.0
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 3.7e-31 140.2 125 60.0
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 6.3e-31 139.4 111 64.0
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 8.2e-31 139.0 76 86.8
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 1.4e-30 138.3 125 63.2
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 1.8e-30 137.9 125 63.2
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 3.1e-30 137.1 150 52.0
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 7.0e-30 136.0 125 62.4
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 2.2e-28 131.0 121 56.2
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 3.8e-28 130.2 95 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 1.1e-27 128.6 95 67.4
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 1.8e-25 121.3 174 44.3
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 1.5e-24 118.2 213 38.5
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 4.4e-24 116.7 127 48.8
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 3.1e-22 110.5 95 58.9
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 5.3e-22 109.8 65 81.5
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 5.3e-22 109.8 221 35.7
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 2.1e-18 97.8 75 62.7
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 2.1e-18 97.8 50 92.0
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 9.8e-16 89.0 51 84.3
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 1.3e-15 88.6 51 82.4
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 9.1e-14 82.4 51 76.5
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 4.2e-11 73.6 47 74.5
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 7.2e-11 72.8 66 53.0
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 7.2e-11 72.8 50 74.0
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 2.1e-10 71.2 45 68.9
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 2.1e-10 71.2 45 68.9
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 1.0e-09 68.9 46 67.4
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 6.8e-09 66.2 42 69.0
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 1.5e-08 65.1 47 68.1
PRCOL_00004634 Prasinoderma coloniale HOM05D006498 ORTHO05D006377 1.7e-07 61.6 85 37.6
Cre06.g278258 Chlamydomonas reinhardtii HOM05D006498 ORTHO05D006377 3.7e-07 60.5 101 37.6
MCO07G543 Micromonas commoda HOM05D006498 ORTHO05D006377 9.1e-06 55.8 70 44.3


User provided reference genes

Program Settings