Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.3e-48 193.4 96 100.0
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 4.9e-24 114.4 98 55.1
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.6e-22 109.4 92 54.3
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 3.5e-22 108.2 96 55.2
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.0e-21 105.1 90 55.6
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.0e-21 105.1 96 55.2
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.1e-21 104.4 96 55.2
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 5.1e-21 104.4 96 55.2
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.6e-21 104.0 96 55.2
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.6e-21 103.6 96 55.2
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 8.6e-21 103.6 88 58.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.1e-20 103.2 85 57.6
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.5e-20 102.1 96 52.1
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.3e-20 101.7 96 53.1
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 3.3e-20 101.7 88 55.7
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 4.3e-20 101.3 88 55.7
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 4.3e-20 101.3 88 55.7
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 4.3e-20 101.3 88 53.4
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 5.6e-20 100.9 85 57.6
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 9.5e-20 100.1 88 52.3
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 9.5e-20 100.1 96 51.0
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 9.5e-20 100.1 96 51.0
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.2e-19 99.8 88 54.5
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.2e-19 99.8 85 56.5
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.6e-19 99.4 87 55.2
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.6e-19 99.4 88 51.1
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-19 99.4 88 52.3
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.1e-19 99.0 96 53.1
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.8e-19 98.6 88 51.1
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.8e-19 98.6 88 52.3
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.8e-19 98.6 88 52.3
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.8e-19 98.6 88 52.3
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.8e-19 98.6 88 52.3
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.8e-19 98.6 88 52.3
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 2.8e-19 98.6 87 54.0
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 3.6e-19 98.2 88 52.3
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 3.6e-19 98.2 88 52.3
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 3.6e-19 98.2 88 50.0
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 4.7e-19 97.8 80 58.8
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 4.7e-19 97.8 80 58.8
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 4.7e-19 97.8 88 53.4
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 4.7e-19 97.8 85 55.3
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 4.7e-19 97.8 88 51.1
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 4.7e-19 97.8 89 49.4
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 6.2e-19 97.4 88 51.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 6.2e-19 97.4 90 52.2
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 6.2e-19 97.4 88 55.7
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 8.1e-19 97.1 88 52.3
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 8.1e-19 97.1 88 50.0
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.4e-18 96.3 88 52.3
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.4e-18 96.3 88 48.9
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.4e-18 96.3 83 53.0
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.4e-18 96.3 88 52.3
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 1.8e-18 95.9 88 50.0
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.8e-18 95.9 88 52.3
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.8e-18 95.9 88 50.0
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 2.3e-18 95.5 88 47.7
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.3e-18 95.5 88 48.9
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.3e-18 95.5 83 50.6
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 2.3e-18 95.5 88 48.9
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.3e-18 95.5 80 58.8
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.1e-18 95.1 91 49.5
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 3.1e-18 95.1 88 48.9
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 3.1e-18 95.1 88 51.1
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 3.1e-18 95.1 94 51.1
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 50.0
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 50.0
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 50.0
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 50.0
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 4.0e-18 94.7 80 56.2
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 53.4
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 50.0
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.0e-18 94.7 88 50.0
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 5.2e-18 94.4 80 58.8
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 5.2e-18 94.4 88 48.9
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 6.8e-18 94.0 88 50.0
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.8e-18 94.0 95 51.6
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 6.8e-18 94.0 88 48.9
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 8.9e-18 93.6 83 49.4
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.2e-17 93.2 83 50.6
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-17 93.2 88 50.0
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.2e-17 93.2 83 54.2
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.2e-17 93.2 83 54.2
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.2e-17 93.2 83 54.2
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.2e-17 93.2 96 49.0
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.2e-17 93.2 85 52.9
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.2e-17 93.2 83 54.2
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.2e-17 93.2 88 52.3
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.5e-17 92.8 83 54.2
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.5e-17 92.8 91 47.3
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.0e-17 92.4 83 51.8
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 2.0e-17 92.4 80 57.5
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 2.0e-17 92.4 80 57.5
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.6e-17 92.0 83 53.0
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 3.4e-17 91.7 88 47.7
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.4e-17 91.3 83 53.0
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 4.4e-17 91.3 80 52.5
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 5.8e-17 90.9 81 51.9
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 5.8e-17 90.9 83 51.8
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 5.8e-17 90.9 83 49.4
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 9.9e-17 90.1 81 49.4
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 9.9e-17 90.1 83 50.6
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.9e-17 90.1 88 48.9
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 1.3e-16 89.7 83 50.6
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.3e-16 89.7 80 55.0
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 1.7e-16 89.4 82 51.2
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.2e-16 89.0 83 53.0
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 2.9e-16 88.6 81 48.1
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 2.9e-16 88.6 91 49.5
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.9e-16 87.8 91 47.3
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 6.4e-16 87.4 88 45.5
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.1e-15 86.7 83 45.8
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.4e-15 86.3 83 50.6
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 2.4e-15 85.5 80 47.5
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 7.1e-15 84.0 88 46.6
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 2.1e-14 82.4 88 45.5
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.7e-14 82.0 96 43.8
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 3.0e-13 78.6 83 43.4
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 3.9e-13 78.2 83 43.4
Zm00001eb233510 Zea mays HOM05D004945 ORTHO05D005536 1.5e-12 76.3 44 79.5
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 9.6e-12 73.6 79 43.0
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 2.1e-11 72.4 74 44.6
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 3.1e-10 68.6 75 45.3
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 5.2e-10 67.8 88 40.9
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.8e-09 64.3 99 39.4
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.7e-08 62.8 86 39.5
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.7e-08 62.8 86 39.5
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.7e-08 62.8 58 48.3
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 2.2e-08 62.4 60 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.9e-08 62.0 74 45.9
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.1e-07 60.1 62 45.2
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.4e-07 59.7 60 46.7
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.9e-07 59.3 52 51.9
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.9e-07 59.3 87 32.2
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.3e-07 57.0 86 33.7
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 9.3e-07 57.0 50 52.0
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 1.2e-06 56.6 79 38.0
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.2e-06 56.6 58 44.8
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.6e-06 56.2 96 34.4
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 2.1e-06 55.8 72 31.9
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 7.8e-06 53.9 57 43.9


User provided reference genes

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