Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 2.2e-85 318.9 162 100.0
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 2.8e-40 169.1 151 58.3
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 5.3e-39 164.9 136 56.6
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 6.9e-39 164.5 155 56.8
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.2e-38 163.7 151 55.6
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 1.5e-38 163.3 165 57.6
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 4.5e-38 161.8 138 58.7
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.3e-37 160.2 157 52.2
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 1.7e-37 159.8 145 55.9
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 1.7e-37 159.8 131 57.3
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 2.5e-36 156.0 149 55.0
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 4.2e-36 155.2 144 52.8
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 4.2e-36 155.2 147 53.1
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 7.2e-36 154.5 132 56.8
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 9.4e-36 154.1 134 54.5
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 1.2e-35 153.7 133 54.9
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 1.2e-35 153.7 146 53.4
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.2e-35 153.7 146 53.4
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 2.7e-35 152.5 137 54.0
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 7.9e-35 151.0 160 50.6
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 7.9e-35 151.0 132 56.1
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 7.9e-35 151.0 134 55.2
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.0e-34 150.6 146 52.7
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 2.3e-34 149.4 149 49.0
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 3.0e-34 149.1 132 53.8
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 5.1e-34 148.3 135 54.1
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 5.1e-34 148.3 133 52.6
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 5.1e-34 148.3 134 54.5
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 5.1e-34 148.3 155 50.3
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 6.7e-34 147.9 155 50.3
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 6.7e-34 147.9 144 52.8
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 8.8e-34 147.5 154 48.7
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 1.5e-33 146.7 136 52.9
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.5e-33 146.7 152 52.6
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.5e-33 146.7 152 52.6
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.5e-33 146.7 133 51.9
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.5e-33 146.7 133 51.9
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 3.3e-33 145.6 134 53.7
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 3.3e-33 145.6 163 49.7
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 5.7e-33 144.8 134 52.2
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 7.4e-33 144.4 164 47.0
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 7.4e-33 144.4 160 49.4
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.3e-32 143.7 137 52.6
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 1.7e-32 143.3 121 56.2
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 1.7e-32 143.3 154 49.4
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.2e-32 142.9 134 51.5
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 2.2e-32 142.9 149 49.7
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 2.8e-32 142.5 139 51.8
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 3.7e-32 142.1 152 50.7
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 3.7e-32 142.1 154 48.7
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 4.8e-32 141.7 125 53.6
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 4.8e-32 141.7 144 50.7
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 6.3e-32 141.4 152 50.7
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 1.1e-31 140.6 147 49.7
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 1.1e-31 140.6 151 49.7
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 1.1e-31 140.6 151 49.7
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.1e-31 140.6 131 55.7
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 1.1e-31 140.6 151 51.0
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 1.8e-31 139.8 148 48.0
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.8e-31 139.8 148 48.6
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 3.1e-31 139.0 152 50.0
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 3.1e-31 139.0 151 49.0
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 4.1e-31 138.7 137 53.3
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 5.3e-31 138.3 151 49.7
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 5.3e-31 138.3 134 50.7
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 7.0e-31 137.9 168 46.4
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 7.0e-31 137.9 151 49.7
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 7.0e-31 137.9 145 52.4
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 1.2e-30 137.1 144 48.6
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 2.0e-30 136.3 154 47.4
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 2.0e-30 136.3 153 47.7
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 4.5e-30 135.2 143 49.7
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 4.5e-30 135.2 135 51.1
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.5e-30 135.2 144 48.6
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 7.7e-30 134.4 118 54.2
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.0e-29 134.0 144 50.7
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.9e-29 132.5 138 49.3
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 2.9e-29 132.5 132 50.0
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 2.9e-29 132.5 135 50.4
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 8.5e-29 131.0 132 49.2
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 8.5e-29 131.0 120 53.3
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 1.1e-28 130.6 145 48.3
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.9e-28 129.8 138 47.1
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 2.5e-28 129.4 120 52.5
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 4.2e-28 128.6 145 48.3
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 4.2e-28 128.6 135 48.9
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 7.2e-28 127.9 154 43.5
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 7.2e-28 127.9 154 43.5
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 7.2e-28 127.9 127 51.2
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 9.4e-28 127.5 150 45.3
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 9.4e-28 127.5 159 45.3
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 2.1e-27 126.3 125 48.0
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 2.7e-27 125.9 152 46.1
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 8.0e-27 124.4 168 43.5
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 1.0e-26 124.0 127 49.6
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 1.0e-26 124.0 132 55.3
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.0e-26 122.5 102 57.8
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 4.0e-26 122.1 160 44.4
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.4e-23 113.6 105 52.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.0e-22 109.8 109 50.5
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 2.0e-22 109.8 122 47.5
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 3.5e-22 109.0 137 42.3
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 5.9e-22 108.2 106 47.2
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.0e-21 107.5 143 41.3
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 5.5e-20 101.7 155 36.8
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 3.4e-17 92.4 111 44.1
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 5.7e-17 91.7 93 49.5
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 2.2e-16 89.7 82 58.5
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.1e-15 87.4 59 66.1
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 2.4e-15 86.3 152 36.8
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.2e-14 84.0 73 57.5
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 3.2e-12 75.9 147 33.3
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 7.2e-12 74.7 77 46.8
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 1.2e-11 73.9 123 38.2
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 3.7e-08 62.4 63 46.0


User provided reference genes

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