Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.6e-146 522.7 262 100.0
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 4.0e-105 385.2 266 74.4
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.3e-90 337.0 238 67.6
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 4.8e-90 335.1 249 66.7
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.4e-89 333.6 243 67.5
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 2.4e-89 332.8 236 68.2
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.4e-89 332.8 243 67.1
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 3.1e-89 332.4 237 68.4
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 9.1e-89 330.9 222 70.3
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 3.4e-88 328.9 238 68.1
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 5.9e-88 328.2 222 72.1
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.3e-87 327.0 239 66.1
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 2.2e-87 326.2 246 65.4
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.9e-87 325.9 222 71.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 8.5e-87 324.3 222 68.5
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.4e-86 323.6 222 68.9
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 1.4e-86 323.6 222 68.9
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.4e-86 323.6 253 64.0
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.5e-86 322.8 239 65.7
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 2.5e-86 322.8 237 65.8
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 3.2e-86 322.4 222 68.0
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 5.5e-86 321.6 249 62.2
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 5.5e-86 321.6 242 64.9
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 5.5e-86 321.6 242 66.9
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 5.5e-86 321.6 222 68.9
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 5.5e-86 321.6 237 65.0
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 5.5e-86 321.6 239 65.3
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 5.5e-86 321.6 222 68.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 5.5e-86 321.6 241 63.5
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 7.2e-86 321.2 222 68.9
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 7.2e-86 321.2 222 68.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.2e-85 320.5 243 65.8
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.7e-85 319.3 222 68.5
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 2.7e-85 319.3 222 69.8
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.0e-84 317.4 222 68.0
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.4e-84 317.0 222 68.0
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.8e-84 316.6 241 64.3
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.8e-84 316.6 241 64.3
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.8e-84 316.6 244 65.6
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 5.1e-84 315.1 222 67.6
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 5.1e-84 315.1 232 65.9
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 5.1e-84 315.1 232 65.9
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 5.1e-84 315.1 232 65.9
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 5.1e-84 315.1 232 65.9
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 5.1e-84 315.1 232 66.4
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 6.7e-84 314.7 222 67.6
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 8.8e-84 314.3 225 67.6
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 8.8e-84 314.3 239 64.0
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.1e-83 313.9 240 66.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.5e-83 313.5 228 67.5
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 1.5e-83 313.5 222 66.2
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.5e-83 313.5 222 67.6
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.6e-83 312.8 227 67.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 2.6e-83 312.8 239 63.6
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.6e-83 312.8 239 63.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 4.4e-83 312.0 232 65.5
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 7.4e-83 311.2 239 63.2
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 9.7e-83 310.8 222 66.2
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 9.7e-83 310.8 222 66.7
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.3e-82 310.5 222 67.6
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.7e-82 310.1 222 65.8
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.7e-82 308.9 239 62.8
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.7e-82 308.9 239 62.3
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 6.3e-82 308.1 227 64.3
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.1e-81 307.4 239 63.6
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.4e-81 307.0 249 60.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.8e-81 306.6 239 61.9
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.4e-81 306.2 223 66.4
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 3.1e-81 305.8 226 62.4
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 3.1e-81 305.8 239 63.6
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 4.1e-81 305.4 236 64.4
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 4.1e-81 305.4 239 63.6
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 4.1e-81 305.4 239 64.4
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 5.3e-81 305.1 239 63.6
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 9.1e-81 304.3 222 65.8
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 9.1e-81 304.3 251 57.8
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.5e-80 303.5 222 66.7
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 5.9e-80 301.6 232 65.1
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.0e-79 300.8 222 64.4
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.9e-79 299.3 222 65.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.2e-78 295.8 233 61.8
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.2e-77 293.9 238 58.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.6e-77 293.5 223 62.8
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 3.6e-77 292.4 243 60.1
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 8.0e-77 291.2 244 59.8
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.1e-75 287.3 209 66.0
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 6.3e-74 281.6 239 58.2
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-73 280.4 231 61.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 7.0e-73 278.1 276 54.3
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 4.5e-72 275.4 197 68.0
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 2.1e-69 266.5 227 58.6
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 4.0e-68 262.3 230 59.6
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 6.8e-68 261.5 220 60.0
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.8e-65 253.4 195 63.1
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 3.1e-65 252.7 230 54.3
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 2.7e-61 239.6 187 65.8
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.0e-60 237.7 222 50.0
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 9.8e-59 231.1 184 62.5
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.7e-55 220.3 151 70.2
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.9e-54 216.9 226 50.4
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 9.5e-54 214.5 155 67.7
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.3e-50 204.1 224 49.1
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 5.4e-49 198.7 222 47.3
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.2e-48 197.6 277 38.6
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-44 184.1 139 63.3
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.1e-41 174.5 242 43.4
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 4.6e-40 169.1 128 64.1
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 3.6e-37 159.5 230 43.0
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.8e-36 157.1 199 43.7
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.2e-34 150.2 233 38.2
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 4.9e-34 149.1 208 43.3
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.3e-31 141.0 173 41.6
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 4.7e-29 132.5 262 34.4
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.3e-23 114.4 106 53.8
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 8.6e-23 111.7 80 65.0
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-16 91.3 55 74.5
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.9e-14 84.0 64 60.9
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 7.3e-14 82.0 63 58.7
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 7.6e-11 72.0 51 60.8
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 2.9e-10 70.1 52 59.6
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.7e-08 63.5 208 26.0
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 6.0e-08 62.4 49 63.3
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.3e-07 61.2 47 55.3


User provided reference genes

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