Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0159800 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 1.0e-251 872.8 416 100.0
Os01g0530500 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 1.5e-37 161.4 333 35.1
Os11g0624400 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 9.2e-35 152.1 354 35.3
Os06g0148700 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.1e-27 128.6 330 31.8
Os11g0594600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 9.2e-27 125.6 431 29.5
Os06g0148600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D000074 1.6e-26 124.8 424 29.7
Os12g0585300 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 5.0e-25 119.8 450 29.1
Os08g0410266 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 1.2e-23 115.2 220 35.0
Os11g0594500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.1e-19 102.1 395 29.6
Zm00001eb167580 Zea mays HOM05D011330 ORTHO05D013903 6.6e-17 92.8 286 28.7
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.5e-16 90.9 381 27.3
Os07g0499900 Oryza sativa ssp. japonica HOM05D033386 ORTHO05D037243 2.8e-15 87.4 257 29.2
Os11g0595100 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.4e-14 85.1 302 28.8
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 2.3e-14 84.3 342 26.9
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 2.3e-14 84.3 368 25.3
QL04p010169 Quercus lobata HOM05D000151 ORTHO05D000074 6.8e-14 82.8 368 25.0
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.2e-13 82.0 379 26.9
TAR626G1713 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.5e-13 81.6 281 26.0
Medtr3g114970 Medicago truncatula HOM05D000151 ORTHO05D000074 2.6e-13 80.9 328 25.0
TAR626G1895 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.5e-13 79.3 382 23.0
arahy.Tifrunner.gnm1.ann1.PYC0TU Arachis hypogaea HOM05D000151 ORTHO05D000074 1.3e-12 78.6 366 25.7
Os01g0673300 Oryza sativa ssp. japonica HOM05D010462 ORTHO05D012694 1.3e-12 78.6 377 25.5
QL04p009567 Quercus lobata HOM05D000151 ORTHO05D000074 2.9e-12 77.4 290 29.7
PGR031G1698 Punica granatum HOM05D000151 ORTHO05D000074 8.3e-12 75.9 356 26.1
QL04p009594 Quercus lobata HOM05D000151 ORTHO05D000074 1.1e-11 75.5 292 28.1
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 1.1e-11 75.5 352 25.0
Os08g0293200 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.9e-11 74.7 234 29.9
Os06g0148900 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 3.2e-11 73.9 128 43.0
Lj2C486T7 Lonicera japonica HOM05D000151 ORTHO05D000074 7.1e-11 72.8 375 24.5
MBI14_g24032_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 7.1e-11 72.8 329 27.1
TAR636G0813 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.1e-11 72.8 277 29.2
Lalb_Chr06g0166761 Lupinus albus HOM05D000151 ORTHO05D000074 1.2e-10 72.0 324 24.4
Os01g0660700 Oryza sativa ssp. japonica HOM05D010462 ORTHO05D012694 2.1e-10 71.2 384 25.0
Nitab4.5_0000798g0030 Nicotiana tabacum HOM05D000151 ORTHO05D000074 4.6e-10 70.1 367 25.3
Nitab4.5_0028739g0010 Nicotiana tabacum HOM05D000151 ORTHO05D000074 7.8e-10 69.3 345 25.8
Zm00001eb259990 Zea mays HOM05D033386 ORTHO05D037243 7.8e-10 69.3 264 29.2
TPR.G38135 Trifolium pratense HOM05D000151 ORTHO05D000074 1.0e-09 68.9 367 24.0
MD05G1357800 Malus domestica HOM05D000151 ORTHO05D000074 1.7e-09 68.2 339 26.5
Os12g0592500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.7e-09 68.2 199 29.6
MBI17_g17513_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.3e-09 67.8 348 27.0
Aqoxy7G01778 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.6e-09 66.2 329 24.3
Peaxi162Scf00074g00438 Petunia axillaris HOM05D000151 ORTHO05D000074 8.6e-09 65.9 319 25.4
Cc10_g00920 Coffea canephora HOM05D000151 ORTHO05D000074 1.1e-08 65.5 369 27.1
TWI38G0386 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.1e-08 65.5 337 26.4
Lalb_Chr06g0166721 Lupinus albus HOM05D000151 ORTHO05D000074 1.5e-08 65.1 324 23.1
Sopen04g025070 Solanum pennellii HOM05D000151 ORTHO05D000074 2.5e-08 64.3 355 24.2
Aqoxy7G03795 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.3e-08 63.9 352 21.9
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 3.3e-08 63.9 346 26.0
Aqoxy7G01775 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.3e-08 63.5 329 23.7
Aqoxy2G00555 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 5.6e-08 63.2 418 21.5
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 5.6e-08 63.2 351 25.9
Medtr3g114990 Medicago truncatula HOM05D000151 ORTHO05D000074 5.6e-08 63.2 362 23.5
Thecc.03G003700 Theobroma cacao HOM05D000151 ORTHO05D000074 5.6e-08 63.2 343 21.0
FvH4_4g04480 Fragaria vesca HOM05D000151 ORTHO05D000074 7.3e-08 62.8 383 25.8
Sopen06g025910 Solanum pennellii HOM05D000151 ORTHO05D000074 9.5e-08 62.4 363 23.1
FAN11G1982 Fragaria x ananassa HOM05D008995 ORTHO05D000074 2.1e-07 61.2 185 29.7
MBI17_g17510_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.1e-07 61.2 328 27.4
Thecc.03G003800 Theobroma cacao HOM05D000151 ORTHO05D000074 2.1e-07 61.2 343 21.3
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.8e-07 60.8 274 27.0
FvH4_3g27200 Fragaria vesca HOM05D008995 ORTHO05D000074 3.6e-07 60.5 185 29.7
Cfa014059 Carpinus fangiana HOM05D000151 ORTHO05D000074 4.7e-07 60.1 362 23.5
Gohir.A09G216560 Gossypium hirsutum HOM05D000151 ORTHO05D000074 4.7e-07 60.1 356 23.3
FAN11G2292 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.1e-07 59.3 338 25.4
Cfa018639 Carpinus fangiana HOM05D000151 ORTHO05D000074 1.4e-06 58.5 340 24.7
Peaxi162Scf00074g00732 Petunia axillaris HOM05D000151 ORTHO05D000074 1.4e-06 58.5 303 24.8
Sed0008086 Sechium edule HOM05D000151 ORTHO05D000074 1.4e-06 58.5 382 22.0
unitig_744.g24282 Utricularia gibba HOM05D000151 ORTHO05D000074 1.4e-06 58.5 179 29.1
CAN.G1235.35 Capsicum annuum HOM05D000151 ORTHO05D000074 1.8e-06 58.2 354 24.0
QL04p009939 Quercus lobata HOM05D000151 ORTHO05D000074 1.8e-06 58.2 235 27.2
FAN12G2073 Fragaria x ananassa HOM05D004442 ORTHO05D002066 2.4e-06 57.8 383 26.1
Nitab4.5_0005962g0010 Nicotiana tabacum HOM05D000151 ORTHO05D000074 2.4e-06 57.8 298 25.5
Atru.chr13.193 Acer truncatum HOM05D000151 ORTHO05D000074 3.1e-06 57.4 196 28.1
MD05G1357500 Malus domestica HOM05D000151 ORTHO05D000074 4.0e-06 57.0 354 24.6
Os05g0539150 Oryza sativa ssp. japonica HOM05D010462 ORTHO05D012694 4.0e-06 57.0 396 23.5
FAN07G1830 Fragaria x ananassa HOM05D008995 ORTHO05D000074 5.2e-06 56.6 185 29.7
FAN16G1355 Fragaria x ananassa HOM05D008995 ORTHO05D000074 8.9e-06 55.8 206 27.2
FAN25G1763 Fragaria x ananassa HOM05D008995 ORTHO05D000074 8.9e-06 55.8 185 28.1
MBI12_g28746_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 8.9e-06 55.8 296 26.7


User provided reference genes

Program Settings