Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.4e-148 529.6 282 100.0
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 4.8e-120 434.9 280 79.3
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 8.9e-74 281.2 283 55.1
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 9.8e-73 277.7 283 50.5
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 2.2e-72 276.6 281 49.5
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.1e-71 274.2 281 50.5
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 1.4e-71 273.9 279 49.5
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 1.8e-71 273.5 278 51.4
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 2.4e-71 273.1 281 49.8
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 4.1e-71 272.3 282 51.1
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 9.2e-71 271.2 280 49.6
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 9.2e-71 271.2 285 47.7
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 9.2e-71 271.2 280 50.4
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 9.2e-71 271.2 279 52.0
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.2e-70 270.8 280 49.3
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.2e-70 270.8 280 50.7
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 2.7e-70 269.6 281 50.2
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.7e-70 269.6 279 48.0
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 4.6e-70 268.9 280 50.7
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 7.8e-70 268.1 281 50.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 7.8e-70 268.1 281 50.9
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.0e-69 267.7 284 50.0
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 1.0e-69 267.7 278 48.9
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.7e-69 266.9 297 48.8
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.3e-69 266.5 286 50.0
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 2.9e-69 266.2 281 49.1
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.9e-69 266.2 280 50.7
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 2.9e-69 266.2 280 50.7
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 2.9e-69 266.2 292 50.3
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 2.9e-69 266.2 281 49.8
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 3.9e-69 265.8 282 46.8
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 3.9e-69 265.8 286 48.3
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 6.6e-69 265.0 280 49.6
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.1e-68 264.2 280 48.2
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.1e-68 264.2 284 49.3
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.5e-68 263.8 280 50.0
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 3.3e-68 262.7 283 48.1
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 5.6e-68 261.9 280 50.0
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 5.6e-68 261.9 295 49.2
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 5.6e-68 261.9 283 47.7
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 7.3e-68 261.5 280 49.3
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 7.3e-68 261.5 281 48.0
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 7.3e-68 261.5 277 46.9
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 7.3e-68 261.5 281 49.1
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 9.5e-68 261.2 280 48.9
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 9.5e-68 261.2 283 48.8
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.2e-67 260.8 282 50.7
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.6e-67 260.4 280 49.6
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 1.6e-67 260.4 281 48.0
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.6e-67 260.4 283 48.1
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.1e-67 260.0 280 48.6
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.1e-67 260.0 292 49.3
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.6e-67 259.2 296 49.0
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.6e-67 259.2 296 49.0
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.6e-67 259.2 280 48.9
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 3.6e-67 259.2 279 50.9
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 4.7e-67 258.8 288 48.3
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 6.2e-67 258.5 280 47.1
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 6.2e-67 258.5 282 47.9
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 6.2e-67 258.5 293 49.8
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 6.2e-67 258.5 280 48.6
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 8.0e-67 258.1 279 48.7
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.0e-66 257.7 292 49.0
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.4e-66 257.3 280 48.6
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.8e-66 256.9 280 48.2
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 4.0e-66 255.8 283 47.3
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 5.2e-66 255.4 285 47.7
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 5.2e-66 255.4 282 48.2
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 6.8e-66 255.0 292 49.0
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.5e-65 253.8 278 46.4
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 3.4e-65 252.7 281 47.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 3.4e-65 252.7 339 43.4
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 4.4e-65 252.3 278 46.0
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 9.8e-65 251.1 274 47.1
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 9.8e-65 251.1 284 47.5
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 9.8e-65 251.1 287 48.8
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 9.8e-65 251.1 287 48.8
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 2.9e-64 249.6 260 49.6
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.9e-64 249.6 281 46.3
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.9e-64 249.6 238 54.2
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 6.4e-64 248.4 282 50.4
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.4e-64 248.4 280 48.2
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.9e-63 246.9 280 44.6
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 3.2e-63 246.1 288 45.8
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 4.1e-63 245.7 282 46.5
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 5.4e-63 245.4 282 47.2
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.2e-63 244.6 290 44.8
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 2.7e-62 243.0 278 45.3
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 3.5e-62 242.7 281 49.5
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-61 241.1 278 45.7
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.0e-61 241.1 280 46.8
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.3e-61 240.0 283 43.8
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 5.0e-61 238.8 303 42.2
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.1e-60 237.7 280 44.6
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 4.3e-60 235.7 299 42.5
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.6e-59 233.8 279 44.8
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 2.8e-59 233.0 287 42.9
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 2.8e-59 233.0 285 43.5
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 4.7e-59 232.3 278 46.4
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.1e-58 231.1 316 41.5
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 1.4e-58 230.7 208 52.9
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 4.0e-58 229.2 234 49.1
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 6.8e-58 228.4 207 55.6
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 8.9e-58 228.0 195 54.9
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 9.8e-57 224.6 258 46.5
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 9.8e-57 224.6 240 49.6
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.3e-56 224.2 278 42.1
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 2.2e-56 223.4 235 48.1
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.7e-56 222.6 191 55.5
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.4e-55 219.9 234 46.6
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 5.4e-55 218.8 204 54.4
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 7.1e-55 218.4 214 48.1
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 9.2e-55 218.0 206 52.9
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.6e-54 217.2 236 47.5
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.6e-54 217.2 226 50.9
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 3.5e-54 216.1 207 53.6
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 4.6e-54 215.7 227 50.2
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 6.0e-54 215.3 224 49.1
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 8.6e-53 211.5 198 52.5
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.3e-52 209.1 214 49.1
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 2.1e-51 206.8 301 40.9
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.2e-49 201.1 287 41.1
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.9e-48 196.4 207 48.3
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 9.2e-47 191.4 226 42.9
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-44 184.5 268 43.3
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.3e-36 155.2 172 46.5
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 5.8e-33 145.6 342 30.7
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 3.9e-29 132.9 191 41.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.9e-28 130.6 221 39.4
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 4.3e-28 129.4 112 55.4
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.3e-28 129.4 115 53.9
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 5.6e-28 129.0 278 28.8
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 2.8e-27 126.7 191 40.8
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 8.4e-24 115.2 119 47.9
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.4e-24 115.2 121 47.1
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 1.2e-22 111.3 126 45.2
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.4e-15 87.8 128 39.1
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.9e-15 87.4 89 44.9
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.9e-15 87.4 137 38.0
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 2.7e-14 83.6 202 28.7
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.8e-11 73.6 100 39.0
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 4.8e-11 72.8 125 38.4
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 4.2e-07 59.7 98 37.8
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 4.2e-07 59.7 110 30.0
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 6.1e-06 55.8 47 53.2


User provided reference genes

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