Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.3e-100 369.8 194 100.0
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 2.0e-72 276.2 179 81.6
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.6e-50 203.4 175 63.4
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.7e-47 193.4 182 58.2
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 8.3e-47 191.0 176 58.0
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 8.3e-47 191.0 176 58.0
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.1e-46 190.7 181 59.7
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.1e-46 190.7 182 56.6
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.8e-46 189.9 187 55.1
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.4e-46 189.5 177 56.5
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 2.4e-46 189.5 182 57.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 3.2e-46 189.1 176 58.5
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.2e-46 189.1 183 56.8
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 4.1e-46 188.7 182 56.6
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 4.1e-46 188.7 182 56.6
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.1e-46 188.7 184 56.5
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.1e-46 188.7 191 53.9
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 4.1e-46 188.7 187 55.6
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 4.1e-46 188.7 187 55.6
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 4.1e-46 188.7 182 56.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.1e-46 188.7 177 58.2
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 5.4e-46 188.3 182 57.7
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 5.4e-46 188.3 179 57.0
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 7.0e-46 188.0 184 56.0
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 7.0e-46 188.0 182 56.0
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 9.2e-46 187.6 175 61.1
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 9.2e-46 187.6 181 56.9
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.2e-45 187.2 183 53.6
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.2e-45 187.2 183 54.1
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.2e-45 187.2 182 56.0
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.6e-45 186.8 176 58.0
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.6e-45 186.8 177 57.6
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.0e-45 186.4 183 53.6
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.0e-45 186.4 176 57.4
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 2.0e-45 186.4 185 57.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.0e-45 186.4 183 56.3
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.7e-45 186.0 183 55.7
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.7e-45 186.0 176 56.8
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.7e-45 186.0 176 56.8
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 2.7e-45 186.0 181 57.5
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.7e-45 186.0 183 56.3
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.5e-45 185.7 183 56.8
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.5e-45 185.7 181 55.2
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 5.9e-45 184.9 184 55.4
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 7.8e-45 184.5 183 53.6
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.0e-44 184.1 181 57.5
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.0e-44 184.1 177 55.9
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.0e-44 184.1 186 54.3
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.3e-44 183.7 181 53.6
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-44 183.7 181 54.1
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-44 183.7 181 53.6
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.3e-44 183.7 181 53.6
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 1.3e-44 183.7 185 53.5
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.3e-44 183.7 186 52.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.7e-44 183.3 185 56.2
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.7e-44 183.3 180 55.0
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 1.7e-44 183.3 174 58.6
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.3e-44 183.0 181 55.2
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 2.3e-44 183.0 175 58.3
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 2.3e-44 183.0 187 54.5
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.3e-44 183.0 179 54.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 3.0e-44 182.6 181 54.1
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 3.0e-44 182.6 183 53.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.0e-44 182.6 182 53.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 3.0e-44 182.6 180 53.9
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 3.0e-44 182.6 187 52.9
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 3.9e-44 182.2 175 58.3
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 5.0e-44 181.8 182 54.9
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 5.0e-44 181.8 179 55.9
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 5.0e-44 181.8 185 54.1
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 5.0e-44 181.8 187 54.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 5.0e-44 181.8 173 57.2
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 6.6e-44 181.4 182 55.5
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 6.6e-44 181.4 179 55.9
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.5e-43 180.3 182 54.4
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.5e-43 180.3 187 51.9
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.5e-43 180.3 185 53.0
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.9e-43 179.9 189 52.4
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 2.5e-43 179.5 182 56.0
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.5e-43 179.5 187 54.5
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.3e-43 179.1 183 53.6
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.3e-43 179.1 187 53.5
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.3e-43 178.7 189 53.4
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 4.3e-43 178.7 173 56.1
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 5.6e-43 178.3 183 53.0
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 5.6e-43 178.3 181 54.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 5.6e-43 178.3 185 53.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 7.3e-43 177.9 144 62.5
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-42 176.8 187 54.0
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.6e-42 176.8 183 52.5
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.6e-42 176.8 191 50.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.6e-42 176.8 187 51.3
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.6e-42 176.8 187 51.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.1e-42 176.4 183 53.0
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 2.1e-42 176.4 185 53.0
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 4.7e-42 175.3 179 53.6
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 4.7e-42 175.3 181 54.1
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 6.2e-42 174.9 185 53.0
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 6.2e-42 174.9 180 54.4
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 8.0e-42 174.5 187 50.8
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.4e-41 173.7 151 62.3
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.4e-41 173.7 155 58.1
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.8e-41 173.3 179 54.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.2e-40 170.6 180 53.9
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.5e-40 170.2 149 58.4
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.5e-40 170.2 190 51.1
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 2.0e-40 169.9 180 54.4
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 9.2e-38 161.0 156 55.1
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.2e-37 160.6 141 60.3
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.0e-37 159.8 150 57.3
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 4.3e-35 152.1 121 63.6
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 7.3e-35 151.4 185 50.3
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.6e-34 150.2 156 51.3
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 4.1e-30 135.6 131 51.9
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-28 130.6 122 56.6
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.6e-28 128.3 121 55.4
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.9e-27 126.7 118 56.8
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.9e-27 126.7 149 46.3
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 1.1e-25 120.9 180 43.3
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 8.9e-25 117.9 190 42.6
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.5e-24 117.1 122 52.5
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.5e-24 117.1 152 46.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.4e-22 110.5 181 39.2
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.2e-21 107.5 161 41.6
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.9e-19 100.1 182 41.2
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.9e-19 100.1 182 41.2
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.1e-17 92.8 67 80.6
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 6.4e-15 85.1 79 57.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 8.4e-15 84.7 91 51.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.4e-15 84.7 57 66.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.9e-14 83.6 83 54.2
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.9e-14 83.6 102 46.1
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 2.1e-13 80.1 145 35.9
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.7e-12 77.0 145 33.1
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.7e-12 77.0 145 33.1
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.5e-11 73.9 59 61.0


User provided reference genes

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