Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.5e-71 273.1 170 100.0
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.9e-47 193.0 170 59.4
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.9e-43 179.1 174 53.4
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 3.9e-32 142.1 172 50.0
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 8.6e-32 141.0 174 51.1
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 4.3e-31 138.7 173 60.7
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 5.6e-31 138.3 172 44.2
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 9.5e-31 137.5 172 45.3
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 9.5e-31 137.5 174 52.3
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.6e-30 135.6 171 43.3
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 8.1e-30 134.4 171 43.9
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.4e-29 133.7 172 43.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.3e-29 132.9 173 43.4
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.1e-29 132.5 173 43.4
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 4.0e-29 132.1 172 43.6
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 5.2e-29 131.7 173 41.6
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.8e-29 131.3 172 47.7
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 6.8e-29 131.3 173 49.7
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 8.9e-29 131.0 172 43.0
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 8.9e-29 131.0 173 43.4
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.2e-28 130.6 174 42.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.2e-28 130.6 174 42.0
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.0e-28 129.8 171 45.0
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.0e-28 129.8 173 41.6
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.6e-28 129.4 111 56.8
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 3.4e-28 129.0 174 41.4
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 7.6e-28 127.9 195 52.8
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.9e-28 127.5 115 55.7
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.9e-28 127.5 115 55.7
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.3e-27 127.1 172 41.3
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 2.2e-27 126.3 173 41.6
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 4.9e-27 125.2 117 54.7
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 4.9e-27 125.2 172 41.9
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 4.9e-27 125.2 172 40.7
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.4e-27 124.8 173 52.0
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 8.4e-27 124.4 194 51.5
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 8.4e-27 124.4 179 39.7
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 8.4e-27 124.4 172 41.3
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.4e-26 123.6 172 43.6
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.9e-26 123.2 172 41.3
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.4e-26 122.9 172 39.5
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 5.4e-26 121.7 177 45.8
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 5.4e-26 121.7 177 45.8
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 5.4e-26 121.7 173 41.6
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 7.1e-26 121.3 172 40.1
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 1.2e-25 120.6 114 54.4
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.6e-25 120.2 209 40.7
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.6e-25 120.2 172 39.5
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.6e-25 120.2 172 39.5
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.5e-25 119.0 111 52.3
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 7.8e-25 117.9 110 54.5
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 7.8e-25 117.9 172 39.5
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.0e-24 117.5 118 52.5
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.0e-24 117.5 174 46.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.0e-24 117.5 173 40.5
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.3e-24 117.1 170 46.5
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.3e-24 117.1 170 44.7
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.3e-24 117.1 170 37.6
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.7e-24 116.7 173 41.0
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.7e-24 116.7 170 42.9
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.7e-24 116.7 174 40.2
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.3e-24 116.3 172 38.4
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.0e-24 115.9 110 51.8
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 3.0e-24 115.9 175 39.4
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.9e-24 115.5 115 52.2
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.9e-24 115.5 170 44.1
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.9e-24 115.5 166 42.8
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 3.9e-24 115.5 113 52.2
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 5.1e-24 115.2 172 37.8
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 6.6e-24 114.8 173 43.9
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.6e-24 114.8 111 52.3
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.6e-24 114.4 172 37.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-23 114.0 173 45.7
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.5e-23 113.6 172 37.8
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.5e-23 113.6 170 36.5
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.9e-23 113.2 172 37.8
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.9e-23 113.2 113 49.6
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 5.6e-23 111.7 172 39.5
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.6e-22 110.2 117 48.7
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.1e-22 109.8 113 51.3
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 2.1e-22 109.8 209 34.4
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.6e-22 109.0 157 52.2
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 8.1e-22 107.8 133 45.1
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.1e-21 107.5 172 36.6
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.4e-21 107.1 168 44.0
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.8e-21 106.7 174 35.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 6.9e-21 104.8 172 37.2
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 8.9e-21 104.4 166 36.1
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 8.9e-21 104.4 169 37.3
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.2e-20 104.0 173 47.4
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.5e-20 103.6 169 35.5
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.6e-20 102.8 166 33.7
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.6e-20 102.8 166 33.7
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.6e-20 102.8 166 33.7
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.6e-20 102.8 111 49.5
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 5.8e-20 101.7 174 36.2
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 7.6e-20 101.3 112 49.1
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 9.9e-20 100.9 108 50.0
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.7e-19 100.1 168 36.3
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 2.2e-19 99.8 170 38.8
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 2.2e-19 99.8 251 33.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.2e-19 99.8 116 46.6
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.9e-19 99.4 172 37.2
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.8e-19 99.0 169 34.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.8e-19 99.0 107 44.9
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 3.8e-19 99.0 173 41.6
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 4.9e-19 98.6 107 44.9
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.4e-18 97.1 113 48.7
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.4e-18 97.1 111 50.5
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.4e-18 96.3 168 32.7
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 3.2e-18 95.9 169 34.9
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.2e-18 95.5 166 34.9
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.2e-17 94.0 173 46.2
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-17 93.2 115 41.7
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.1e-17 93.2 115 41.7
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.0e-17 91.7 113 46.0
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.0e-16 90.9 115 40.9
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.0e-16 90.9 115 38.3
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.0e-16 90.9 172 34.9
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.0e-16 90.9 172 32.0
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.3e-16 90.5 106 48.1
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.3e-16 90.5 115 40.9
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-16 89.7 115 40.0
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 2.3e-16 89.7 115 40.0
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.0e-16 89.4 115 40.0
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.0e-16 89.4 115 40.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 5.1e-16 88.6 177 38.4
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 6.6e-16 88.2 115 40.0
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 6.6e-16 88.2 115 39.1
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 6.6e-16 88.2 115 39.1
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 6.6e-16 88.2 225 37.3
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.5e-15 86.3 130 39.2
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 3.3e-15 85.9 110 45.5
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 4.3e-15 85.5 115 39.1
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 4.3e-15 85.5 115 39.1
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.6e-15 85.1 56 66.1
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.6e-14 83.6 56 66.1
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.6e-14 83.6 83 45.8
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 2.8e-14 82.8 272 25.4
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 8.1e-14 81.3 55 67.3
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.4e-13 80.5 96 44.8
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 6.9e-13 78.2 81 43.2
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 9.0e-13 77.8 102 43.1
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.5e-12 77.0 70 55.7
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 1.3e-11 73.9 83 44.6
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.9e-11 72.0 79 46.8
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.4e-10 70.5 81 43.2
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 2.7e-09 66.2 74 45.9
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 4.6e-09 65.5 35 80.0
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.9e-08 62.4 67 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 2.5e-07 59.7 55 54.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 7.4e-07 58.2 78 39.7


User provided reference genes

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