Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 6.3e-88 327.4 164 100.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.2e-51 206.8 155 74.2
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.3e-24 117.1 159 48.4
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 3.7e-24 115.5 154 45.5
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 8.3e-24 114.4 156 46.8
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.4e-23 113.6 155 47.7
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.4e-23 112.8 159 42.8
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 3.2e-23 112.5 154 47.4
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.2e-22 110.5 153 46.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.6e-22 110.2 175 41.7
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.1e-22 109.8 156 46.2
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.1e-22 109.8 156 46.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.1e-22 109.8 157 45.9
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.1e-22 109.8 162 43.2
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.5e-22 109.0 158 43.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.5e-22 109.0 155 44.5
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 4.6e-22 108.6 155 44.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.6e-22 108.6 157 46.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 6.0e-22 108.2 154 44.2
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 7.8e-22 107.8 157 47.1
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 7.8e-22 107.8 157 47.1
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 7.8e-22 107.8 157 47.1
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.8e-22 107.8 159 44.7
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.0e-21 107.5 156 45.5
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-21 107.5 156 44.2
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.0e-21 107.5 170 41.8
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.7e-21 106.7 152 45.4
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.3e-21 106.3 185 42.2
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 3.0e-21 105.9 155 45.2
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.9e-21 105.5 157 45.9
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.9e-21 105.5 159 45.3
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 5.1e-21 105.1 149 45.6
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 5.1e-21 105.1 164 43.3
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 6.6e-21 104.8 156 46.8
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 6.6e-21 104.8 156 46.8
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.1e-20 104.0 161 46.0
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.1e-20 104.0 162 43.2
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.5e-20 103.6 171 43.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.5e-20 103.6 168 38.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.3e-20 102.1 155 44.5
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 4.3e-20 102.1 142 44.4
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 4.3e-20 102.1 155 44.5
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.3e-20 102.1 155 44.5
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.6e-20 101.7 154 44.8
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 5.6e-20 101.7 155 40.6
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 7.3e-20 101.3 159 40.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 7.3e-20 101.3 156 39.7
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 9.5e-20 100.9 162 43.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 9.5e-20 100.9 161 42.9
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 9.5e-20 100.9 160 41.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.2e-19 100.5 154 46.1
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.6e-19 100.1 156 44.2
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.6e-19 100.1 155 43.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.1e-19 99.8 161 43.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.1e-19 99.8 161 40.4
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.8e-19 99.4 155 43.2
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.8e-19 99.4 153 40.5
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.8e-19 99.4 150 42.0
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.8e-19 99.4 158 45.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 3.6e-19 99.0 154 44.2
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 3.6e-19 99.0 154 44.2
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 3.6e-19 99.0 154 44.2
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.6e-19 99.0 160 41.9
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.7e-19 98.6 150 42.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.7e-19 98.6 137 45.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 6.2e-19 98.2 153 42.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 8.1e-19 97.8 157 42.7
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 8.1e-19 97.8 154 41.6
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 8.1e-19 97.8 150 43.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-18 97.4 156 45.5
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.1e-18 97.4 156 45.5
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.1e-18 97.4 158 43.0
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-18 97.4 155 41.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-18 97.1 155 41.9
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.4e-18 97.1 155 43.9
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.4e-18 96.3 152 40.8
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-18 96.3 159 44.7
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 3.1e-18 95.9 157 42.7
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 3.1e-18 95.9 156 43.6
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 3.1e-18 95.9 155 44.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 4.0e-18 95.5 126 47.6
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 4.0e-18 95.5 113 43.4
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.8e-18 94.7 157 41.4
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 6.8e-18 94.7 154 42.9
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.2e-17 94.0 161 42.9
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.5e-17 93.6 185 41.1
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.0e-17 93.2 166 39.8
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.6e-17 92.8 150 40.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.6e-17 92.8 156 39.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.6e-17 92.8 153 39.2
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.6e-17 92.8 158 43.7
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 3.4e-17 92.4 102 49.0
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.4e-17 92.4 161 41.6
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 4.4e-17 92.0 153 39.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.4e-17 92.0 157 43.3
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 4.4e-17 92.0 153 38.6
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 4.4e-17 92.0 153 38.6
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 5.8e-17 91.7 154 41.6
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.8e-17 91.7 153 41.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 7.6e-17 91.3 155 41.9
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 7.6e-17 91.3 157 38.9
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 7.6e-17 91.3 157 42.7
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.3e-16 90.5 157 38.2
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.3e-16 90.5 159 42.1
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 2.2e-16 89.7 148 41.9
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.9e-16 88.6 160 41.2
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.1e-15 87.4 153 41.2
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.1e-15 87.4 148 37.8
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.1e-15 87.4 148 37.8
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.1e-15 87.4 151 36.4
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.9e-15 86.7 127 39.4
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.9e-15 86.7 159 37.1
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.9e-15 86.7 52 76.9
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.9e-15 86.7 111 46.8
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.2e-15 85.5 168 36.9
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.2e-15 85.5 168 36.9
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 4.2e-15 85.5 151 39.7
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.2e-15 85.5 157 40.1
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 9.2e-15 84.3 159 40.9
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 9.2e-15 84.3 179 34.6
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.2e-14 84.0 155 40.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.5e-14 82.4 154 40.9
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 3.5e-14 82.4 110 46.4
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.5e-14 82.4 153 35.9
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.6e-14 82.0 150 38.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 4.6e-14 82.0 174 33.3
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 6.0e-14 81.6 155 41.9
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.0e-14 81.6 131 43.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.8e-14 81.3 144 44.4
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 7.8e-14 81.3 168 36.9
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 7.8e-14 81.3 152 40.1
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.0e-13 80.9 154 38.3
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.0e-13 80.9 165 38.8
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.0e-13 79.3 154 40.3
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.0e-13 79.3 142 39.4
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 3.9e-13 79.0 94 47.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.1e-13 78.6 131 38.2
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.7e-13 77.8 57 63.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 8.7e-13 77.8 106 45.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.1e-12 77.4 93 46.2
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.1e-12 77.4 157 35.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.5e-12 77.0 154 37.0
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.5e-12 77.0 181 34.3
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.9e-12 76.6 180 35.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.3e-12 75.5 50 68.0
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 4.3e-12 75.5 175 34.9
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 7.3e-12 74.7 153 31.4
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.6e-11 73.6 148 34.5
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.8e-11 72.8 147 38.1
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-10 70.9 160 29.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.6e-09 66.2 82 41.5
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.4e-09 65.9 152 33.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.8e-09 65.1 58 60.3
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.8e-08 62.4 95 37.9
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.2e-06 57.4 157 32.5


User provided reference genes

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