Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 3.8e-81 304.7 145 100.0
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 1.2e-69 266.5 142 86.6
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 4.7e-63 244.6 137 79.6
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 6.2e-63 244.2 137 79.6
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 8.1e-63 243.8 137 80.3
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 8.9e-62 240.4 136 78.7
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 4.4e-61 238.0 141 78.0
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 6.4e-60 234.2 141 75.2
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 6.4e-60 234.2 137 75.2
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 8.3e-60 233.8 141 75.2
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 1.1e-59 233.4 146 74.7
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.4e-59 233.0 141 75.2
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 2.4e-59 232.3 137 74.5
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 4.1e-59 231.5 137 75.2
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 4.1e-59 231.5 141 73.0
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 5.4e-59 231.1 137 75.2
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 7.1e-59 230.7 137 76.6
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 7.1e-59 230.7 137 73.0
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 7.1e-59 230.7 138 76.1
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 9.2e-59 230.3 139 74.8
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.6e-58 229.6 137 73.0
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 2.1e-58 229.2 137 73.0
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 2.7e-58 228.8 141 73.0
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 3.5e-58 228.4 136 76.5
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 4.6e-58 228.0 137 75.2
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 4.6e-58 228.0 138 74.6
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 6.0e-58 227.6 142 73.9
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 7.8e-58 227.3 137 75.2
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.7e-57 226.1 137 75.2
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 1.7e-57 226.1 141 73.8
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 2.3e-57 225.7 137 73.0
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 3.0e-57 225.3 141 71.6
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 3.9e-57 224.9 140 72.1
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 3.9e-57 224.9 139 74.8
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 5.1e-57 224.6 137 73.0
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 6.6e-57 224.2 137 75.2
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 1.1e-56 223.4 137 72.3
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.1e-56 223.4 138 74.6
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 1.9e-56 222.6 137 70.8
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 3.3e-56 221.9 137 73.0
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 3.3e-56 221.9 137 70.8
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 7.3e-56 220.7 137 70.1
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 9.5e-56 220.3 137 73.0
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 9.5e-56 220.3 137 70.1
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 2.1e-55 219.2 137 70.8
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 2.1e-55 219.2 136 73.5
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 2.1e-55 219.2 137 72.3
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 2.8e-55 218.8 137 69.3
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 4.7e-55 218.0 137 71.5
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 6.2e-55 217.6 153 66.0
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 1.4e-54 216.5 137 71.5
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 2.4e-54 215.7 137 70.1
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 2.4e-54 215.7 134 73.9
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 3.1e-54 215.3 137 70.8
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 6.8e-54 214.2 136 73.5
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 1.2e-53 213.4 170 60.6
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 2.0e-53 212.6 137 67.9
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 5.8e-53 211.1 137 67.9
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 9.9e-53 210.3 143 69.2
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 9.9e-53 210.3 137 69.3
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 1.7e-52 209.5 134 68.7
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 1.7e-52 209.5 134 68.7
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 2.9e-52 208.8 137 67.2
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 3.8e-52 208.4 143 69.2
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 3.8e-52 208.4 128 75.0
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 4.9e-52 208.0 138 71.7
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 4.9e-52 208.0 136 67.6
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 4.9e-52 208.0 133 69.2
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 6.4e-52 207.6 134 67.9
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 1.1e-51 206.8 133 69.2
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 1.1e-51 206.8 133 68.4
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 1.4e-51 206.5 158 61.4
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 68.9
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 67.4
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 68.9
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 68.9
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 67.4
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 68.9
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 2.4e-51 205.7 135 68.9
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 5.4e-51 204.5 133 68.4
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 7.1e-51 204.1 137 68.6
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 6.0e-50 201.1 137 66.4
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 6.0e-50 201.1 133 66.2
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 5.1e-49 198.0 133 66.2
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 8.7e-49 197.2 163 57.1
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 1.1e-48 196.8 130 70.8
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 5.6e-48 194.5 121 76.0
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 5.6e-48 194.5 125 72.8
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 3.6e-47 191.8 117 74.4
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 1.4e-46 189.9 107 78.5
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 9.9e-45 183.7 128 68.0
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 5.4e-43 177.9 127 68.5
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.6e-42 176.4 110 70.0
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 3.5e-42 175.3 103 73.8
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.7e-41 172.9 109 73.4
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 8.7e-41 170.6 107 71.0
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 7.3e-40 167.5 136 55.1
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 4.8e-39 164.9 136 55.9
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.1e-38 163.7 137 57.7
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.1e-38 163.7 154 53.9
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 2.4e-38 162.5 99 72.7
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 3.1e-38 162.2 107 70.1
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 2.0e-37 159.5 135 52.6
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 6.7e-33 144.4 153 49.0
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 1.1e-32 143.7 120 57.5
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.8e-30 136.3 88 69.3
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 1.9e-27 126.3 85 63.5
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.2e-27 125.2 137 47.4
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 1.6e-26 123.2 127 49.6
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 2.1e-26 122.9 89 62.9
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 9.6e-24 114.0 134 44.8
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 4.5e-21 105.1 71 69.0
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 1.9e-19 99.8 63 76.2
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 4.2e-19 98.6 55 78.2
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 9.3e-19 97.4 99 52.5
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 2.7e-18 95.9 58 70.7
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 1.3e-17 93.6 65 69.2
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 3.0e-17 92.4 55 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 4.3e-16 88.6 76 55.3
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 7.4e-16 87.8 76 57.9
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 1.6e-15 86.7 57 68.4
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 1.6e-15 86.7 55 67.3
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 5.3e-14 81.6 101 46.5
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 2.0e-13 79.7 101 45.5
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 2.0e-13 79.7 123 34.1
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 2.1e-10 69.7 53 60.4
PRCOL_00005216 Prasinoderma coloniale HOM05D006215 ORTHO05D007719 5.1e-09 65.1 167 35.3
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 2.0e-08 63.2 47 59.6
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 3.3e-08 62.4 36 80.6
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 7.4e-08 61.2 42 59.5


User provided reference genes

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