Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 2.4e-113 412.5 264 100.0
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.0e-68 264.2 213 84.0
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.5e-46 189.9 209 52.2
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 2.1e-45 186.8 207 52.7
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.4e-44 184.1 202 58.4
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 2.4e-44 183.3 209 51.7
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 5.2e-44 182.2 204 52.5
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 5.2e-44 182.2 207 50.7
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 6.8e-44 181.8 204 52.9
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 8.9e-44 181.4 210 60.5
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.2e-43 181.0 204 52.0
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.5e-43 180.6 204 61.8
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 2.0e-43 180.3 207 50.7
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.6e-43 179.9 198 66.2
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.6e-43 179.9 207 51.2
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.4e-43 179.1 204 52.9
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 5.8e-43 178.7 207 50.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 5.8e-43 178.7 207 49.8
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 9.9e-43 177.9 204 53.4
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 9.9e-43 177.9 209 53.1
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.3e-42 177.6 206 51.0
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.3e-42 177.6 204 51.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.3e-42 177.6 209 56.9
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.7e-42 177.2 209 51.7
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.7e-42 177.2 204 52.5
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.2e-42 176.8 209 60.8
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.2e-42 176.8 209 55.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 3.8e-42 176.0 212 49.1
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 3.8e-42 176.0 209 51.2
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 4.9e-42 175.6 207 50.2
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.9e-42 175.6 209 50.2
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.4e-42 175.3 204 59.3
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 6.4e-42 175.3 207 50.7
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.4e-42 174.9 204 58.8
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 8.4e-42 174.9 209 59.8
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.1e-41 174.5 209 58.9
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-41 174.1 207 51.2
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.4e-41 174.1 208 49.0
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.4e-41 174.1 204 53.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.9e-41 173.7 204 52.9
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.9e-41 173.7 204 50.0
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.9e-41 173.7 209 57.9
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 2.4e-41 173.3 207 48.8
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 3.2e-41 172.9 204 53.4
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 4.2e-41 172.6 209 52.6
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.2e-41 172.6 209 57.4
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 4.2e-41 172.6 206 50.5
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 5.4e-41 172.2 209 52.6
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 7.1e-41 171.8 207 50.7
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 7.1e-41 171.8 208 50.5
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 7.1e-41 171.8 209 49.3
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 9.3e-41 171.4 207 51.2
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 9.3e-41 171.4 209 48.3
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.6e-40 170.6 204 49.0
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.6e-40 170.6 207 47.3
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.1e-40 170.2 207 51.2
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.7e-40 169.9 204 56.9
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 2.7e-40 169.9 209 50.2
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 3.5e-40 169.5 209 56.0
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.6e-40 169.1 204 55.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.8e-40 168.3 207 57.5
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 7.8e-40 168.3 202 60.4
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 7.8e-40 168.3 204 55.9
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.0e-39 167.9 204 49.0
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.0e-39 167.9 209 56.0
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.3e-39 167.5 209 48.3
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.3e-39 167.5 209 54.1
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.3e-39 167.5 201 50.7
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 1.7e-39 167.2 204 55.9
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.7e-39 167.2 208 58.7
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 2.3e-39 166.8 204 50.0
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.0e-39 166.4 193 50.8
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 3.9e-39 166.0 209 55.5
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 5.1e-39 165.6 207 47.8
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.6e-39 165.2 224 48.7
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.6e-39 165.2 209 57.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.1e-38 164.5 198 52.0
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.5e-38 164.1 198 57.1
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.5e-38 163.3 206 53.4
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.5e-38 163.3 208 58.2
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 3.3e-38 162.9 208 49.5
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 3.3e-38 162.9 209 47.8
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 4.3e-38 162.5 212 49.1
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 4.3e-38 162.5 197 50.3
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 5.6e-38 162.2 201 51.7
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 7.3e-38 161.8 201 51.7
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 9.6e-38 161.4 218 55.0
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.6e-37 160.6 203 58.1
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.6e-37 160.6 201 50.7
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.6e-37 160.6 201 50.7
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.1e-37 160.2 201 50.7
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.1e-37 160.2 201 50.7
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.1e-37 160.2 201 50.7
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.1e-37 160.2 201 58.7
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.1e-37 160.2 201 50.7
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.1e-36 157.9 201 50.7
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.1e-36 157.9 205 49.3
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 5.3e-36 155.6 201 48.3
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 6.9e-36 155.2 191 49.2
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 6.9e-36 155.2 201 50.2
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.0e-35 153.7 201 49.3
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.0e-35 153.7 208 56.7
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.3e-34 151.0 193 47.2
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.9e-34 149.8 199 48.2
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 2.9e-34 149.8 205 55.1
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 4.9e-34 149.1 199 47.2
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 4.2e-33 146.0 207 44.9
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.7e-32 143.3 203 54.2
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.5e-32 142.9 193 49.2
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 3.5e-32 142.9 175 54.9
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 4.6e-32 142.5 249 47.0
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 4.6e-32 142.5 203 44.8
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.0e-31 141.4 209 45.9
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.3e-31 141.0 204 58.8
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 3.0e-31 139.8 202 44.1
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 5.1e-31 139.0 163 55.8
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 5.1e-31 139.0 215 43.3
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.1e-30 137.9 210 41.4
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.1e-30 137.9 201 45.8
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.1e-30 137.9 183 46.4
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.1e-30 137.9 198 44.9
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.9e-30 137.1 193 43.5
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 4.3e-30 136.0 174 45.4
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.3e-29 134.4 193 43.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.6e-29 132.9 193 43.0
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 5.8e-27 125.6 175 45.7
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-23 114.8 210 37.1
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.5e-22 110.9 142 49.3
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 6.0e-16 89.0 105 65.7
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.2e-11 74.7 126 38.1
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 6.5e-10 68.9 93 43.0
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 4.3e-06 56.2 48 60.4


User provided reference genes

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