Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.9e-79 299.3 167 100.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 9.6e-52 207.2 170 75.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.6e-52 207.2 170 75.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.6e-52 207.2 170 75.9
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.8e-51 205.7 170 77.1
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.7e-51 205.3 166 75.9
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.1e-50 203.8 168 75.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 5.3e-50 201.4 167 73.1
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 6.9e-50 201.1 162 75.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 5.8e-49 198.0 167 71.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 8.4e-48 194.1 172 59.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 3.2e-47 192.2 151 75.5
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.2e-47 192.2 120 94.2
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.6e-46 188.3 164 70.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.1e-45 184.9 148 77.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 7.4e-44 181.0 168 68.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.8e-43 179.1 149 74.5
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.7e-43 178.7 163 60.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.0e-41 172.9 229 45.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-41 172.6 177 54.2
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 5.9e-41 171.4 177 53.7
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 2.9e-40 169.1 171 54.4
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 5.0e-40 168.3 160 56.9
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.1e-39 167.2 169 66.3
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.2e-39 165.6 171 53.8
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.6e-38 163.3 132 78.0
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.9e-37 158.7 170 67.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.1e-36 157.1 157 65.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.1e-36 157.1 163 63.8
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.5e-36 156.8 146 55.5
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.5e-36 156.8 167 55.1
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.5e-36 156.8 167 62.9
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.5e-36 156.8 158 65.2
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.9e-36 156.4 164 50.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.9e-36 156.4 151 57.0
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.9e-36 156.4 166 50.0
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.5e-36 156.0 164 63.4
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.3e-36 155.6 168 53.6
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 7.4e-36 154.5 169 63.3
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-35 153.7 137 71.5
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 164 62.8
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 166 65.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 166 65.1
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.2e-35 152.9 169 49.7
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.2e-35 152.9 154 65.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.7e-35 152.1 165 63.6
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.7e-35 152.1 165 63.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 3.7e-35 152.1 165 63.6
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 3.7e-35 152.1 166 61.4
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 6.3e-35 151.4 164 48.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 8.2e-35 151.0 169 62.1
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.8e-34 149.8 167 63.5
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.4e-34 149.4 118 57.6
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.4e-34 149.4 129 77.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.4e-34 149.4 162 65.4
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 5.3e-34 148.3 169 60.9
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.3e-34 148.3 161 64.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 6.9e-34 147.9 168 49.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.1e-34 147.5 151 50.3
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-33 147.1 151 50.3
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.5e-33 146.7 167 60.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.5e-33 146.7 167 60.5
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.0e-33 146.4 164 59.8
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.6e-33 146.0 155 61.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 3.4e-33 145.6 165 61.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.4e-33 145.6 166 62.0
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.4e-33 145.6 167 62.9
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 4.5e-33 145.2 168 51.2
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 5.9e-33 144.8 168 59.5
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 165 46.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.0e-32 144.1 151 53.6
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 158 60.8
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.3e-32 143.7 158 47.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.3e-32 143.7 168 60.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.3e-32 143.7 170 45.9
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.2e-32 142.9 148 64.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.9e-32 142.5 151 48.3
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.9e-32 142.5 164 58.5
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.9e-32 142.5 164 49.4
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.9e-32 142.5 167 59.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.8e-32 142.1 163 46.0
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 3.8e-32 142.1 167 48.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 5.0e-32 141.7 155 61.3
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.0e-32 141.7 165 58.2
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 5.0e-32 141.7 151 57.0
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.4e-31 140.2 164 47.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.5e-31 139.4 166 56.6
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 4.2e-31 138.7 151 61.6
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 4.2e-31 138.7 158 62.0
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.2e-31 138.7 164 57.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 4.2e-31 138.7 152 60.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 4.2e-31 138.7 111 79.3
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 5.5e-31 138.3 157 45.9
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 5.5e-31 138.3 151 49.0
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 7.2e-31 137.9 150 62.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 9.4e-31 137.5 161 57.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.7e-30 136.0 167 57.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.7e-30 136.0 166 57.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.6e-30 135.6 144 64.6
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.7e-30 135.2 164 43.9
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.0e-29 134.0 157 46.5
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.8e-29 133.3 162 58.0
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 8.8e-29 131.0 168 43.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.1e-28 130.6 165 46.1
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 2.6e-28 129.4 128 64.1
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 3.3e-28 129.0 161 52.2
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.4e-28 128.6 157 44.6
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.8e-27 125.9 148 59.5
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.8e-27 125.2 166 42.8
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 4.8e-27 125.2 166 42.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.8e-27 125.2 166 42.8
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.8e-27 125.2 144 50.7
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 6.3e-27 124.8 169 44.4
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.1e-26 124.0 169 53.8
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-26 124.0 148 43.9
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-26 123.2 157 43.3
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.4e-26 122.9 143 43.4
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.4e-26 122.9 142 43.7
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.1e-26 122.5 169 40.8
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.1e-26 122.5 169 40.8
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 3.1e-26 122.5 144 46.5
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 9.1e-26 120.9 168 53.0
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.5e-25 120.2 159 40.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.5e-25 120.2 159 40.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.5e-25 120.2 159 40.3
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.5e-25 120.2 168 53.0
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-25 119.8 170 52.4
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.0e-25 119.8 170 51.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.6e-25 119.4 170 51.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.6e-25 119.4 170 51.8
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 3.4e-25 119.0 142 57.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.4e-25 119.0 142 57.7
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.4e-25 119.0 143 43.4
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.4e-25 119.0 163 43.6
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.5e-25 118.6 168 39.9
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 7.7e-25 117.9 168 49.4
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.0e-24 117.5 151 57.6
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.3e-24 117.1 167 41.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.7e-24 116.7 154 39.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.2e-24 116.3 169 52.1
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.9e-24 115.9 144 41.0
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 5.0e-24 115.2 171 50.9
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.0e-21 105.9 148 53.4
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.9e-21 105.5 92 59.8
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.8e-19 99.4 111 47.7
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 5.9e-17 91.7 93 50.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 6.1e-14 81.6 92 45.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.0e-13 79.3 79 48.1
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 3.5e-09 65.9 95 38.9
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.1e-07 60.8 44 68.2
MCO13G083 Micromonas commoda HOM05D047589 ORTHO05D048997 9.4e-07 57.8 67 47.8
Zm00001eb078890 Zea mays HOM05D002893 ORTHO05D003387 1.6e-06 57.0 68 45.6
Lj6C271T5 Lonicera japonica HOM05D000088 ORTHO05D004426 2.1e-06 56.6 66 48.5
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 4.7e-06 55.5 72 41.7


User provided reference genes

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